Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1060 ATGTTAGACATGGTTGGAAGGTCCGTTCAACCACTTATTGGGTTTATTGTGCTTTTACTATGTTCCAAACCCGACCTTGGATCCTGTATTCAGGTTGGTGATGCTAAAGTTGGGTGCATAGAGAGGGAGAGACAAGCTCTCCTTAAGTTTAAAGAAGACATTGCTGATGATTTTGGAATTCTTTCTTCATGGAGGAGTGAAAAGAACAAAAGAGATTGTTGCAAATGGAGAGGAGTCCAGTGTAGCAGCCAAACCGGTCACATAACCTCGCTTGATCTCAGTGCCTATGAATACAAAGATGAGTTCCGGCATTTAAGAGGTAAGATTAGTCCTTCATTGCTTGAACTGCAGCAGTTAAACCATTTGGACCTTAGTGGCAACGATTTTGAAGGGAGGTCTATGCCTGAATTTATTGGTTCCCTCACCAAAATGAGATACCTCGATCTCTCTTCTACTTATTTAGCTGGACCTCTTCCCCATCAACTTGGAAATCTTTCAAACTTGAATTTTCTTGATCTCAGCGGTAATTCTAATATGAGTTCTGAAAATCTCGACTGGCTTTCTCGCCTTTCTTCTTTAACACACCTTGGCCTGAATCATCTTAACCTTAGTAAAGCCATCCGATGGGCAGATGCAATTAATAAACTTCCTTCTCTCATTGACTTGCTCTTAAAATCTTGCGATCTCCCTTCCCCCATCACTCCATCTCTTTCCCTTGTTACTTCTTCAATGTCTCTTGCCGTCCTTGATCTCTCTTGTAATCAGCTCAGTACTTCGATATACCCATGGTTGTTCAACTTCAATAGCAGCCTTGTTCATCTTGACCTCTCCTATAATCATCTGCAGGCTTCACCTCCTGATGCTTTTGGGAACATGGTTTCTCTTGAATACCTTGATCTCTCTTGGAACCAACTTAAAGGTGAGATTCCGAAATCTTTTAGTAGCAGCCTTGTTTTTCTTGACCTCTCTAATAATCAGTTACAAGGTTCAATTCCAGACACTTTTGGGAACATGACCTCTCTTAGAACTGTCAACCTCACTAGGAATCAACTTGAAGGTGAGATTCCAAAATCCTTCAACAATTTATGTAATTTACAGATACTGAAGTTGCATCGAAACAATCTTGCTGGAGTGCTTGTAAAAAACTTGTTGGCTTGTGCAAATGACACATTGGAAATTTTGGATTTATCTCATAACCAATTCATTGGATCACTCCCTGATTTGATTGGATTTTCATCGTTGACAAGGTTGCATCTTGGACATAACCAACTAAATGGGACTTTACCTGAAAGCATAGCACAGCTAGCTCAACTTGAATTGTTGAAAATTCCTTCAAATTCATTGCAAGGCACTGTCTCTGAGGCCCACCTCTTCAGTCTCTCCAAATTGCAACGTTTGGACTTATCTTTCAACTCCCTGTTGACTTTGAATTTGAGCTCAGACTGGGTTCCCCAATTTCAACTCACTCATATATTTTTAGCCTCTTGCAAACTGGGACCACGTTTTCCAGGCTGGCTTAGAACTCAGAAAGGTGTTGGTTGGCTTGATATCTCAGGTTCTGGAATTTCGGATGTCATCCCCAATTGGTTTTGGAATTTCACTTCCAATTTGAATCGGTTAAATATTTCCAACAATCAGATCACTGGTGTTGTGCCGAATGCATCAATAGAATTTTCTCGTTTCCCTCAAATGGATATGAGTTCAAACTACTTCGAGGGTTCAATACCAGTATTTATTTTTTATGCTGGATGGTTGGATCTCTCTAAGAACATGTTTTCAGGATCAATTTCTTCGTTGTGTGCGGTTAGTCGCGGAGCTTCGGCCTATCTTGACCTCTCGAATAATCTGCTGTCAGGTGAACTACCCAACTGTTGGGCACAATGGGAAGGATTAGTAGTTCTTAATTTAGAAAATAACAATTTCTCTGGGAAAATTCAAGATTCGATTGGCTCCTTAGAAGCAATTGAATCATTGCATTTAAGAAACAACAAGTTAACCGGAGAATTGCCTTTGTCTTTGAAGAATTGCACAAAGTTGAGGGTAATTGATTTAGGAAGGAATAAACTGTGTGGAAACATACCATCTTGGATAGGAAGAAGTCTCCCAAATTTGGTTGTTCTTAATTTACGATTCAATGAATTTTATGGAAGCATACCTATGGATATGTGTCAACTGAAAAAAATTCAAATATTGGACCTCTCCAACAATAATATCTCAGGTATGATACCAAGATGTTTCAATAATTTCACAGCCATGGTTCAACAAGGGAGTTTGGTCATCACTTATAATTACACAATTCCATGCTTTAAACCGTTGTCTCGTCCAAGCTCTTATGTTGATAAGCAAATGGTTCAATGGAAAGGAAGAGAACTTGAGTATGAGAAAACTCTTGGACTTTTAAAGAGTATTGATCTTTCAAGCAACGAACTAAGTGGAGAAATTCCTAGAGAAGTAACAAATCTTTTAGATTTGATTTCATTGAACTTGTCGAGAAATTTTTTGACTGGATTAATCCCTCCTACAATTGGTCAATTGAAAGCAATGGATGCTCTTGATTTGTCTTGGAATCGACTTTTTGGTAAAATTCCTTCCAATTTATCTCAAATAGATCGCCTCAGTGTATTAGACCTATCACACAATGACTTCTGGGGTAAAATTCCAAGTGGGACACAACTACAAAGCTTCAATTCTTCGACATACGAGGGAAATCCCAAACTTTGTGGACCACCCCTTTTGAAAAAATGTCTAGAAGATGAAAGAGGGGAACATTCCCCTCCCAATGAAGGCCATGTTCAAAAAGAGGCAAATGACTTATGGTTTTATATTGGGGTTGCTCTTGGATTCATTGTAGGATTTTGGGGAATCTGTGGCACTTTACTCCTCAACAGCTCATGGAGAAATGCCAACTTCATATCCTTGAAAAAACCAAAAATTTGA 2937 0.3909 MLDMVGRSVQPLIGFIVLLLCSKPDLGSCIQVGDAKVGCIERERQALLKFKEDIADDFGILSSWRSEKNKRDCCKWRGVQCSSQTGHITSLDLSAYEYKDEFRHLRGKISPSLLELQQLNHLDLSGNDFEGRSMPEFIGSLTKMRYLDLSSTYLAGPLPHQLGNLSNLNFLDLSGNSNMSSENLDWLSRLSSLTHLGLNHLNLSKAIRWADAINKLPSLIDLLLKSCDLPSPITPSLSLVTSSMSLAVLDLSCNQLSTSIYPWLFNFNSSLVHLDLSYNHLQASPPDAFGNMVSLEYLDLSWNQLKGEIPKSFSSSLVFLDLSNNQLQGSIPDTFGNMTSLRTVNLTRNQLEGEIPKSFNNLCNLQILKLHRNNLAGVLVKNLLACANDTLEILDLSHNQFIGSLPDLIGFSSLTRLHLGHNQLNGTLPESIAQLAQLELLKIPSNSLQGTVSEAHLFSLSKLQRLDLSFNSLLTLNLSSDWVPQFQLTHIFLASCKLGPRFPGWLRTQKGVGWLDISGSGISDVIPNWFWNFTSNLNRLNISNNQITGVVPNASIEFSRFPQMDMSSNYFEGSIPVFIFYAGWLDLSKNMFSGSISSLCAVSRGASAYLDLSNNLLSGELPNCWAQWEGLVVLNLENNNFSGKIQDSIGSLEAIESLHLRNNKLTGELPLSLKNCTKLRVIDLGRNKLCGNIPSWIGRSLPNLVVLNLRFNEFYGSIPMDMCQLKKIQILDLSNNNISGMIPRCFNNFTAMVQQGSLVITYNYTIPCFKPLSRPSSYVDKQMVQWKGRELEYEKTLGLLKSIDLSSNELSGEIPREVTNLLDLISLNLSRNFLTGLIPPTIGQLKAMDALDLSWNRLFGKIPSNLSQIDRLSVLDLSHNDFWGKIPSGTQLQSFNSSTYEGNPKLCGPPLLKKCLEDERGEHSPPNEGHVQKEANDLWFYIGVALGFIVGFWGICGTLLLNSSWRNANFISLKKPKI* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1060 978 Gene3D Ribonuclease Inhibitor 312 385 IPR032675 -
Vvi16g1060 978 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 240 476 - -
Vvi16g1060 978 Gene3D Ribonuclease Inhibitor 386 457 IPR032675 -
Vvi16g1060 978 PRINTS Leucine-rich repeat signature 460 473 - -
Vvi16g1060 978 PRINTS Leucine-rich repeat signature 317 330 - -
Vvi16g1060 978 FunFam Tyrosine-sulfated glycopeptide receptor 1 771 920 - -
Vvi16g1060 978 SUPERFAMILY L domain-like 70 383 - -
Vvi16g1060 978 Pfam Leucine rich repeat 390 448 IPR001611 GO:0005515
Vvi16g1060 978 Pfam Leucine rich repeat 316 375 IPR001611 GO:0005515
Vvi16g1060 978 Pfam Leucine rich repeat 800 858 IPR001611 GO:0005515
Vvi16g1060 978 Pfam Leucine rich repeat 245 305 IPR001611 GO:0005515
Vvi16g1060 978 PANTHER LRR RECEPTOR-LIKE KINASE 245 315 - -
Vvi16g1060 978 SMART LRR_typ_2 338 361 IPR003591 -
Vvi16g1060 978 SMART LRR_typ_2 534 557 IPR003591 -
Vvi16g1060 978 SMART LRR_typ_2 116 141 IPR003591 -
Vvi16g1060 978 SMART LRR_typ_2 292 315 IPR003591 -
Vvi16g1060 978 SMART LRR_typ_2 652 675 IPR003591 -
Vvi16g1060 978 SMART LRR_typ_2 845 869 IPR003591 -
Vvi16g1060 978 SMART LRR_typ_2 725 748 IPR003591 -
Vvi16g1060 978 SMART LRR_typ_2 797 821 IPR003591 -
Vvi16g1060 978 SMART LRR_typ_2 411 435 IPR003591 -
Vvi16g1060 978 SMART LRR_typ_2 460 481 IPR003591 -
Vvi16g1060 978 SMART LRR_typ_2 269 291 IPR003591 -
Vvi16g1060 978 SMART LRR_typ_2 362 386 IPR003591 -
Vvi16g1060 978 SMART LRR_typ_2 316 337 IPR003591 -
Vvi16g1060 978 ProSiteProfiles Leucine-rich repeat profile. 390 412 IPR001611 GO:0005515
Vvi16g1060 978 SMART LRR_sd22_2 460 480 - -
Vvi16g1060 978 SMART LRR_sd22_2 845 868 - -
Vvi16g1060 978 SMART LRR_sd22_2 411 434 - -
Vvi16g1060 978 SMART LRR_sd22_2 725 751 - -
Vvi16g1060 978 SMART LRR_sd22_2 292 313 - -
Vvi16g1060 978 SMART LRR_sd22_2 165 186 - -
Vvi16g1060 978 Pfam Leucine Rich Repeat 727 749 IPR001611 GO:0005515
Vvi16g1060 978 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 582 764 - -
Vvi16g1060 978 SUPERFAMILY RNI-like 285 574 - -
Vvi16g1060 978 SUPERFAMILY L domain-like 585 912 - -
Vvi16g1060 978 Gene3D Ribonuclease Inhibitor 211 311 IPR032675 -
Vvi16g1060 978 Gene3D Ribonuclease Inhibitor 458 918 IPR032675 -
Vvi16g1060 978 Gene3D Ribonuclease Inhibitor 39 210 IPR032675 -
Vvi16g1060 978 Pfam Leucine rich repeat N-terminal domain 42 82 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1060 Vvi-Chr16 18986474 18989410 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1060 35 915 Receptor kinase-like Gene Family AT4G13920 32.492 6.56e-110 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1060 - K13466 vvi:100853108 1126.69