Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1059 ATGGAGAAAATGCAGTATGCTGAGGAACTTGTGAGGGAGTTTCTTGTCTTTAGAGGGTTTACAAATACACTGCAAGCTTTTGAGGGAGAGTTATGCACTGATATTGGTAAAGGTTTTCAAGTGGATAAGATATTAGATTTAATTTTCTCAGTGTACATTCCCAAGTTTCAGGCAGAAAAATTAGTTTGTCTGCTGAGCTTTTTTAAGCAGTGCTTTTCTTCATCATCTGAGACTGTACTTATTGCTACACTATCAAAATTAGAGGTGTCTATTCTACGCTACTATATTGTCCATGCCATACAATCAGGAAGAACAGAAAGGGTTATAGAGTTTTTTGGAATGAATGGCAATGACCTGCTGCAAAGAGGACAGGACTGGACTCCATGGTTTGCTGTTCCATATCTAAAGAACCCAAGCTTGGATCCCCAGTTTCGGATTTATTTCTCAAGGGAGTGGTTGGAAGCTTTGCGCCTCTCAGTCAGGAATTTCTTAAGTGAAATATTTAATGGTACTCGCATCCCTGCTCTGCTGAAGATTTGTTCTGAAAAGAATACAGTGAACCGTCTCAAAAAAGACATCAAGCAACTTAATCTTAAGTTGTCTCAACTTCAGGCATTATTGGAGGAAAAAGAGGCTCAGCTATTCCAGTCAAGGAGTTATGCTCCATCTACAATAGAAGAAAGCATGGGTGGAACGAACAGCTCAACATATTCAGTACCTGGGACTCTTCTTAGTGGCTTGCATCAGGGAAGTATTCTTCCCTCTAGATTTCCTCATGAAACTTGTGCTGCTACAAATCAACATCTGGGTGAAAGAGAGTTGGCTCAGGAATTGGATGACACAGGGGTGGCCAAGATTTTATCAGAGATGAGTCCATCCAACTCTGATCGTGGTTCAAGTTCATTAGTGCATCTTCATCTTGGAGATGCTGGAGCAAGTAATATGCTTGAGATGTCCCAAGATGACTTTTGTACTGAAAATGGCAGAGAAATGGAAGGAGAAGAGGAATTCCCAGAAGTTAAAGTGGATTTCCAGGAAACATTCTTGGGCCACACGAGTCCAATCAGCCGTTGCCGTTTTTCTGTATCTGGAGACAATATTGCCAGCGCTTCAGTGGATGGCACAGTCAGGATTTGGACATATGATTCTTCAACCCCAACATCTAGAAACGCAACCATCTATTGTGGGGCCGAGATCATGTCTCTTGAATGGGAGTGTAAATCTGATCGTTTGCTTCTTATAGGCACTGCTGATGGAGGCATTAAAGCTTGGAATGTTGATGCAAAGAGAGTTGTTTGTGATCTTAACACTACTGAAGCATTTCCAAGTGTGTTGGATCTGAAATGTAGCCCTGTGGAGCCAATATTTGTTTCTGCAGCAGCATCCAGAGGGCAAGGGCGAAATTATTTTGATAAATTTGGTTTCGCTTCTTTGACTGTTTGGAACATGAAGACTTGGAAGGCCGTGACAGTTCTTCCTCTTGGTGAAGATCCACCAGCAATTACTTCTCTATGCTTTAACCACAATGGGAAAATTTTAGCTGCTGCTGCCACTGATGGAATGATTCACATGTTTGATATGTCTGCTGGACTACAAATTACTGGTTGGCCTGCTCATGACTCTGCTATAAGCTCTCTACTTTTTGGTCCTGATGAAACAAGCATTTATAGTTTGGGGTCTGATGGAAAGATATTGGAATGGAGCTTGCACAACCAAGGTCAAATTCTTTGGTCAAGAAATTGTAGCAGGTTCTGCAACATTGAGAGCTCAAGACACTATAGGCATGAAATGTCATTAGATGCTAATGGGAGGAGATTATTGGTAACATCTGGTTCAGTAAGAGCACCCATATATCAGGTTCGAGGTCATACTAGTGGGTGGAGAACATTGCCTCATACTGCAGCTATAACAACTGTAGACTGGCACCCGACATTGCCCATCCTTGTGACTGGTTCAGCTGATCACTCTGTTCGTGTCACATCTATATTATAA 1992 0.4182 MEKMQYAEELVREFLVFRGFTNTLQAFEGELCTDIGKGFQVDKILDLIFSVYIPKFQAEKLVCLLSFFKQCFSSSSETVLIATLSKLEVSILRYYIVHAIQSGRTERVIEFFGMNGNDLLQRGQDWTPWFAVPYLKNPSLDPQFRIYFSREWLEALRLSVRNFLSEIFNGTRIPALLKICSEKNTVNRLKKDIKQLNLKLSQLQALLEEKEAQLFQSRSYAPSTIEESMGGTNSSTYSVPGTLLSGLHQGSILPSRFPHETCAATNQHLGERELAQELDDTGVAKILSEMSPSNSDRGSSSLVHLHLGDAGASNMLEMSQDDFCTENGREMEGEEEFPEVKVDFQETFLGHTSPISRCRFSVSGDNIASASVDGTVRIWTYDSSTPTSRNATIYCGAEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTEAFPSVLDLKCSPVEPIFVSAAASRGQGRNYFDKFGFASLTVWNMKTWKAVTVLPLGEDPPAITSLCFNHNGKILAAAATDGMIHMFDMSAGLQITGWPAHDSAISSLLFGPDETSIYSLGSDGKILEWSLHNQGQILWSRNCSRFCNIESSRHYRHEMSLDANGRRLLVTSGSVRAPIYQVRGHTSGWRTLPHTAAITTVDWHPTLPILVTGSADHSVRVTSIL* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1059 663 Gene3D - 263 464 IPR015943 GO:0005515
Vvi16g1059 663 Pfam Anaphase-promoting complex subunit 4 WD40 domain 493 548 IPR024977 -
Vvi16g1059 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 629 663 - -
Vvi16g1059 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 348 383 - -
Vvi16g1059 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 389 IPR001680 GO:0005515
Vvi16g1059 663 Coils Coil 186 213 - -
Vvi16g1059 663 PANTHER OS05G0299300 PROTEIN 1 662 - -
Vvi16g1059 663 Pfam WD domain, G-beta repeat 346 379 IPR001680 GO:0005515
Vvi16g1059 663 Pfam WD domain, G-beta repeat 617 659 IPR001680 GO:0005515
Vvi16g1059 663 SUPERFAMILY WD40 repeat-like 333 659 IPR036322 GO:0005515
Vvi16g1059 663 SMART WD40_4 623 661 IPR001680 GO:0005515
Vvi16g1059 663 SMART WD40_4 529 568 IPR001680 GO:0005515
Vvi16g1059 663 SMART WD40_4 386 425 IPR001680 GO:0005515
Vvi16g1059 663 SMART WD40_4 341 380 IPR001680 GO:0005515
Vvi16g1059 663 SMART WD40_4 485 526 IPR001680 GO:0005515
Vvi16g1059 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 629 663 IPR001680 GO:0005515
Vvi16g1059 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 536 569 IPR001680 GO:0005515
Vvi16g1059 663 Gene3D - 471 662 IPR015943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1059 K24760 - vvi:100261168 1296.57