Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1057 ATGGCTACAAGCCCCTTTCGATATTTTATTTCCCTTTTTCTGCTTTTGCTCTGTTTCGAAGCCTGTTTCAGGGTGGGTGACACTAAAGTTGGGTGCATAGAGAGGGAGACACAGGCTCTCCTTCACTTCAAAAAAGTTGTTCTCGATGACCATGGAGTGCTTTCTTCATGGGGGAATGGGGAAGACAAAAAAGATTGTTGCAAATGGAGAGGAGTGGAGTGTAACAACCAGACGGGTCATGTGATCAGGCTTGATCTTCATCACCAATATTTGGGAGGTAAGATATCTCAGCTTGGTCCTTCATTGGCAGAGTTGCAGCACTTGAAGCATTTGAACCTCAGCTGGAATCATTTTAAAGGAATTCTTCCCACTCAACTTGGAAATCTTTCCAATTTGCAATCCCTTGATCTCGGCAGTAATTATGGGCATATGAGCTGTGAGAACCTTGACTGGCTTTCTCACCTTCCTTCGTTAACACACCTTGACTTGAGTGGGGTTAATCTTAGTAAAGCAATTCATTGGCCCCAAGCAATTAATAAAATGCCTTCCTTAACTGAGTTATACTTGCACTATACTGAGCTTCCTCCGATTATTCCAACAATATCCATTTCCCATATTAATTCTTCTACTTCTCTTGTTGTGCTTGATCTCTCCTCGAATAGTCTCACTTCTTCAATATACCCATGGTTGTTCAACTTCAGTAGCAGCCTTGTTCATCTTGACCTCTCTTGGAATGATCTAAATGGTTCAATTCCGGATGCTTTTGGAAACATGACTACTCTGGCATATCTTGATCTCTTTTGGAACGAGCTACGTGGTTCAATTCCGGATGCTTTTGGAAACATGACTAGTCTGGCATATCTTGATCTCTCTTGGAATCAACTTGAAGGTGAGATTCCGAAATCCTTGAGAGATTTATGTAATTTACAAGAATTATTATTGTCTCGGAACAATCTCACTGGACTGAAGGAAAAAGATTATCTGGCCTGCCCTAATAACACATTAGAGGTTTTAGATATATCTTATAATCAATTGAAAGGGTCATTTCCCGATCTTTCTGGATTTTCACAGTTGAGAGAATTATTTCTTGAATTCAATCAACTAAACGGAACTTTACCTGAAAGTATTGGACAACTAGCTCAACTTCAAGTGTTGTCCATTCCTTCAAATTCATTGCGAGGCACTGTCTCAGCAAACCACCTTTTTGGTCTCTCCAACCTGTCTGTCTTAGACTTATCTTTCAACTCCCTAATATTCAACATAAGCCTTGAGCAAGTTCCCCAATTTCGAGCCTCACGTATAATGTTGGCCTCTTGCAAATTAGGCCCACGTTTTCCTAATTGGATTCAAACTCAAAAAGGTCTGCTAGATCTTGATATCTCTGCTTCTGGAATTGCAGATGTCATTCCCAATTGGTTTTGGAATTTAACTTCAGATTTACAATTGTTAAACATTTCCAACAATCACATCTCAGGGACTTTGCCAAATTTACAAGCAACTCCTTTAGTGTTGGATATGAGTTCAAATTGCTTGGAAGGTTCAATACCACAATCTGTTTTCAATGCTGGATGGTTAACTACCCAAATGTTGGGAGCAATGGGAAGATTTAATTGTTCTTGA 1620 0.3981 MATSPFRYFISLFLLLLCFEACFRVGDTKVGCIERETQALLHFKKVVLDDHGVLSSWGNGEDKKDCCKWRGVECNNQTGHVIRLDLHHQYLGGKISQLGPSLAELQHLKHLNLSWNHFKGILPTQLGNLSNLQSLDLGSNYGHMSCENLDWLSHLPSLTHLDLSGVNLSKAIHWPQAINKMPSLTELYLHYTELPPIIPTISISHINSSTSLVVLDLSSNSLTSSIYPWLFNFSSSLVHLDLSWNDLNGSIPDAFGNMTTLAYLDLFWNELRGSIPDAFGNMTSLAYLDLSWNQLEGEIPKSLRDLCNLQELLLSRNNLTGLKEKDYLACPNNTLEVLDISYNQLKGSFPDLSGFSQLRELFLEFNQLNGTLPESIGQLAQLQVLSIPSNSLRGTVSANHLFGLSNLSVLDLSFNSLIFNISLEQVPQFRASRIMLASCKLGPRFPNWIQTQKGLLDLDISASGIADVIPNWFWNLTSDLQLLNISNNHISGTLPNLQATPLVLDMSSNCLEGSIPQSVFNAGWLTTQMLGAMGRFNCS* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1057 539 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 199 522 - -
Vvi16g1057 539 PRINTS Leucine-rich repeat signature 212 225 - -
Vvi16g1057 539 PRINTS Leucine-rich repeat signature 404 417 - -
Vvi16g1057 539 SMART LRR_typ_2 155 180 IPR003591 -
Vvi16g1057 539 SMART LRR_typ_2 355 379 IPR003591 -
Vvi16g1057 539 SMART LRR_typ_2 235 257 IPR003591 -
Vvi16g1057 539 SMART LRR_typ_2 210 233 IPR003591 -
Vvi16g1057 539 SMART LRR_typ_2 404 429 IPR003591 -
Vvi16g1057 539 SMART LRR_typ_2 258 281 IPR003591 -
Vvi16g1057 539 SMART LRR_typ_2 306 329 IPR003591 -
Vvi16g1057 539 SMART LRR_typ_2 105 128 IPR003591 -
Vvi16g1057 539 SMART LRR_typ_2 282 305 IPR003591 -
Vvi16g1057 539 FunFam Piriformospora indica-insensitive protein 2 228 324 - -
Vvi16g1057 539 SUPERFAMILY L domain-like 32 325 - -
Vvi16g1057 539 Gene3D Ribonuclease Inhibitor 204 326 IPR032675 -
Vvi16g1057 539 Pfam Leucine rich repeat N-terminal domain 35 75 IPR013210 -
Vvi16g1057 539 ProSiteProfiles Leucine-rich repeat profile. 479 501 IPR001611 GO:0005515
Vvi16g1057 539 FunFam Uncharacterized protein 32 203 - -
Vvi16g1057 539 Gene3D Ribonuclease Inhibitor 31 203 IPR032675 -
Vvi16g1057 539 Gene3D Ribonuclease Inhibitor 327 532 IPR032675 -
Vvi16g1057 539 Pfam Leucine Rich repeat 332 346 IPR001611 GO:0005515
Vvi16g1057 539 Pfam Leucine Rich repeat 234 249 IPR001611 GO:0005515
Vvi16g1057 539 SUPERFAMILY RNI-like 251 518 - -
Vvi16g1057 539 ProSiteProfiles Leucine-rich repeat profile. 308 329 IPR001611 GO:0005515
Vvi16g1057 539 Pfam Leucine rich repeat 356 417 IPR001611 GO:0005515
Vvi16g1057 539 Pfam Leucine rich repeat 107 165 IPR001611 GO:0005515
Vvi16g1057 539 Pfam Leucine rich repeat 252 295 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1057 Vvi-Chr16 18944487 18946301 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1057 32 526 Receptor kinase-like Gene Family AT4G13920 29.926 4.45e-47 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1057 - K13466 vvi:100254307 1014.22