Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1054 ATGAGCTGTGAGAACCTTGACTGGCTTTCTCACCTTCCTTCGTTAACACACCTTGACTTGAGTGGGGTTTATCTTAGTAAAGCAATCCACTGGCCACAAGCAATTAATAAAATGCCTTCCCTAACTGAGTTATACTTGAGTGATACTCAGCTTCCTCCGATTATTCCAACAATATCCATTTCCCATATTAATTCTTCTACTTCTCTTGCTGTGCTTCATCTCTCCTTGAATGGTCTCACTTCTTCAATATACCCATGGTTGTTCAACTTCAGTAGCAGCCTTGTTCATCTTGACCTCTCTATGACTGATCTAAATGAATTAATTCCGGATGCTTTTGGAAACATGACTACTCTGGCATATCTTGATCTCTCTTGGAACGAGCTATGTGGTTCAATTCCGGATGCTTTTGGAAACATGACTACTCTGGCATATCTTGATCTCTCTTTGAACGAGCTACGTGGTTCAATTCCGGATGCTTTTGGAGACATGACTACTCTGGCACACCTTGACCTTCATTCTAATCATCTAAATGGATCAATTCCGGATGCTTTTGGAAACATGACTAGTCTGGCATATCTTGATCTCTCTTCGAATCAACTTGAAGGACTTCAGATGGGTTGCATCTCAAGGATTAGTAGGTGA 642 0.4112 MSCENLDWLSHLPSLTHLDLSGVYLSKAIHWPQAINKMPSLTELYLSDTQLPPIIPTISISHINSSTSLAVLHLSLNGLTSSIYPWLFNFSSSLVHLDLSMTDLNELIPDAFGNMTTLAYLDLSWNELCGSIPDAFGNMTTLAYLDLSLNELRGSIPDAFGDMTTLAHLDLHSNHLNGSIPDAFGNMTSLAYLDLSSNQLEGLQMGCISRISR* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1054 213 Gene3D Ribonuclease Inhibitor 1 213 IPR032675 -
Vvi16g1054 213 Pfam Leucine rich repeat 133 176 IPR001611 GO:0005515
Vvi16g1054 213 Pfam Leucine rich repeat 68 128 IPR001611 GO:0005515
Vvi16g1054 213 PRINTS Leucine-rich repeat signature 187 200 - -
Vvi16g1054 213 PRINTS Leucine-rich repeat signature 142 155 - -
Vvi16g1054 213 FunFam Piriformospora indica-insensitive protein 2 108 206 - -
Vvi16g1054 213 SMART LRR_typ_2 187 210 IPR003591 -
Vvi16g1054 213 SMART LRR_typ_2 38 62 IPR003591 -
Vvi16g1054 213 SMART LRR_typ_2 139 162 IPR003591 -
Vvi16g1054 213 SMART LRR_typ_2 115 138 IPR003591 -
Vvi16g1054 213 SMART LRR_typ_2 92 114 IPR003591 -
Vvi16g1054 213 SMART LRR_typ_2 163 186 IPR003591 -
Vvi16g1054 213 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 9 161 - -
Vvi16g1054 213 Pfam Leucine Rich Repeat 190 209 IPR001611 GO:0005515
Vvi16g1054 213 SUPERFAMILY L domain-like 7 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1054 Vvi-Chr16 18902562 18905654 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1054 9 202 Receptor kinase-like Gene Family AT1G28440 37.436 9.02e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1054 - K13466 vvi:100247451 392.504