Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1049 ATGGCTACAAGCCCCTTTCGATATTTTATTTCCCTTTTTCTGCTTTTGCTCTGTTTCGAAGCCTGTTTGAGGGTGGGTGATGCTAAAGTTGGGTGCAGAGAGAGGGAGAGGCAAGCTCTCCTTCACTTCAAACAAGGTGTTGTCGATGACGATGGAGTGCTTTCTTCATGGGGGAATGGGGAAGACAAAAGAGATTGTTGCAAATGGAGAGGAGTCAAGTGTAACAACCAGACGGGTCATGTGATCAGGCTTGATCTTCATGCCCAATCTTTGGGAGGTAAGATTGGTCCTTCATTGGCAGAGTTGCAGCACTTGAAGCATTTGAACCTCAGCTCGAATGATTTTGAAGGAATTCTTCCCACTCAACTCGGTAATCTTTCCAACTTGCAATCCCTTGATCTTGGCTATAATTATGGGGATATGACCTGTGGAAACCTTGACTGGCTTTGTCACCTTCCTTTCTTAACACACCTTGACTTGAGTTGGGTTAATCTTAGTAAAGCAATCCATTGGCCCCAAGCAATTAATAAAATGCCTTCCCTAACTGAGTTATACTTGATTGATACTCAGCTTCCTTCGATTATTCCAACAATATCCATTTCCCATATTAATTCTTCTACTTCTCTTGCTGTGCTTCATCTCCCCTCGAATGGTCTCACTTCTTCAATATACCCATGGTTGTTCAACTTCAGTAGCAGCCTTGTTCATCTTGACCTCTCTTGGAATGATCTAAATGGTTCAACTCCGGATGCTTTTGGAAACATGACTACTCTGGCATATCTTGATCTCTCTTCGAACGAGCTACGTGGTTCAATTCCGGATGCTTTTGGAAACATGACTACTCTGGCATATCTTGATCTCTCTTGGAACAAGCTACGTGGTTCAATTCCGGATGCTTTTGGAAACATGACTAGTCTGGCATATCTTGATCTCTCTTTGAATGAACTTGAAGGACTTCAGCTGGGTTGCATCTCAAGGATTAGTAGGTGA 990 0.4303 MATSPFRYFISLFLLLLCFEACLRVGDAKVGCRERERQALLHFKQGVVDDDGVLSSWGNGEDKRDCCKWRGVKCNNQTGHVIRLDLHAQSLGGKIGPSLAELQHLKHLNLSSNDFEGILPTQLGNLSNLQSLDLGYNYGDMTCGNLDWLCHLPFLTHLDLSWVNLSKAIHWPQAINKMPSLTELYLIDTQLPSIIPTISISHINSSTSLAVLHLPSNGLTSSIYPWLFNFSSSLVHLDLSWNDLNGSTPDAFGNMTTLAYLDLSSNELRGSIPDAFGNMTTLAYLDLSWNKLRGSIPDAFGNMTSLAYLDLSLNELEGLQLGCISRISR* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1049 329 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 149 318 - -
Vvi16g1049 329 SUPERFAMILY L domain-like 32 322 - -
Vvi16g1049 329 Gene3D Ribonuclease Inhibitor 202 329 IPR032675 -
Vvi16g1049 329 PRINTS Leucine-rich repeat signature 303 316 - -
Vvi16g1049 329 PRINTS Leucine-rich repeat signature 258 271 - -
Vvi16g1049 329 FunFam Uncharacterized protein 32 200 - -
Vvi16g1049 329 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Vvi16g1049 329 Pfam Leucine rich repeat 249 292 IPR001611 GO:0005515
Vvi16g1049 329 Gene3D Ribonuclease Inhibitor 32 201 IPR032675 -
Vvi16g1049 329 SMART LRR_typ_2 232 254 IPR003591 -
Vvi16g1049 329 SMART LRR_typ_2 178 201 IPR003591 -
Vvi16g1049 329 SMART LRR_typ_2 279 302 IPR003591 -
Vvi16g1049 329 SMART LRR_typ_2 102 125 IPR003591 -
Vvi16g1049 329 SMART LRR_typ_2 303 326 IPR003591 -
Vvi16g1049 329 SMART LRR_typ_2 255 278 IPR003591 -
Vvi16g1049 329 Pfam Leucine rich repeat N-terminal domain 35 75 IPR013210 -
Vvi16g1049 329 Pfam Leucine Rich repeat 231 246 IPR001611 GO:0005515
Vvi16g1049 329 FunFam Piriformospora indica-insensitive protein 2 225 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1049 Vvi-Chr16 18849598 18853118 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1049 38 327 Receptor kinase-like Gene Family AT3G51740 34.014 1.16e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1049 - K13466 vvi:100853486 608.601