Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1046 ATGCTGCCGCACTCTCTCTCACTACCCCTCTCTCATCTCTCCTCCAATTTCAAGAATCAGGATTTCGAATCTTCCAAGAACTTCACTTTCTCTGAATCAAAGATTTCGTATTGTCGATACTCTCTCCAGAAATGGAGAGGTTCATGCCATAGGCAGGAAGAATCTTCTGCAGAAATTCCAGAGTTTGAGACTGTAGAAGATAAGCTGCCAGAAGAATTGGCAAAGCCTGAAGTTGAACAGTCTGATAAATTGAAAAAAGATTGCGTTTCAAAGGTTCGAAAGGCATTAAAGGCTGCTGATGCATTTTTTGGAATGAAACCTTGGACAGTGCCTTGGACAGCAATGACCATTTTGCAGGTTATGCTCCTCTGGATTGCTTCATTCTGGTTGGTGGGATCTTGGATAATTCCATTTCTGGCTCATAAAGCAGGTTTCAGAAAGGAGACCATGACACACAGAGGGCAAGCCTTGTATGGCCTCTTGGGTGAAGTGACCGAAGGTCTTTCTGGGATTGCAATTCTTCATATCTGCCTTGCAAGGTTCCATCCCCTTCCATCTGATTGGTTCAGGTTAAGCCTTGAAGGGAAGTGGCACTTTGATGTTGGCTTGGGTTGCCTCATGTTTCCCCTGGTCAACCGTCTCTCGCAGATCAATGAAAATTTATTGCCTGTTGCTCCCTCCACTCCGGTCACTGGGTCAAGCGTTCAGCAATCAATTGTTGCACGAGACCCATTGGCAATGGCCCTTTATGCAGTGTTTCTTTCAGTTTGTGCCCCTATCTGGGAGGAGATTTTCTTCCGTGGATTCCTTCTCCCTTCCTTGACCAGGTACATGCCTGTATGGTGCTCCATTCTTGTGAGTTCAGTAGCTTTTGCCTCAGCACATCTCAACTTGCAGACAATGCTACCATTTATATTCCTTGGGATGTTGATTGGTGCCGTCTTTGCACGATCAAGGAACCTGTTGGCATCAATGCTCTTGCATAGTCTCTGGAATGCCTTTGTATTCGTAGATCTCATGAAATATGAGAGCATGTCACATCACAGTATGGAGGACACTGCTCTCGTTTCCCTTACAAGATACTCTTTTGTTGGGATGGAGGTGGTTGGGGAAGGCGAAGGGGAAGGGGAAGGTGGTGGCATGGAGGCCTCCCAACCTCTCTCCATTGAAAGCTTTTCGTATAGTTGGTTAATAAACCTGAAACCTTCCTTTGAGAGCCTAGATGATTCCCTTAGAACCTCCCTTGATGTGTCCGATGAAGCCTCCTTCATTGAGATGGACCCAAGAATGCCTCCCTCTAAGAGATTCTTTAGAAATTCCCAGGATTTCAACTTTGATTTCCCCATTTCCCAACCCCCTCTTAGTCTTGTTCATGCTGATGAGCTCTTCTCTAATGGCCTCATCATGCCTATCTTCATGGAGCCACTGAAGATGGAGGCATATGATGGGTCATATTCCCTTCCAGCCACGCCCATCTCTTCATCACATGCTCCAAAACATGTACTGTCAGCCACCAACACTCACTGTTCTTCCTTGAGAAGATGCCGAAGATTATCAAAACAAATCCTTCAGAAGTACCTGGATTTTCTTAGGCCCCTTTACAGGAGAATACGTGGTCGCAGAATTGGGTCCAGAGCTGAAAGTGTTAATTCAAGAATGCAGGAAGGGAAGAGCTGGGTTTATTCACCAGAAGCATCTCCCAGAACAAGCACAGCCTATTCTACTGGGGATTGGCGCAAGTCTTGTGATTCAGAGAGCTCAATTTACGAGGCAGTTCTCCATTGCAAGCGATCCATTGGAAAATGA 1806 0.4585 MLPHSLSLPLSHLSSNFKNQDFESSKNFTFSESKISYCRYSLQKWRGSCHRQEESSAEIPEFETVEDKLPEELAKPEVEQSDKLKKDCVSKVRKALKAADAFFGMKPWTVPWTAMTILQVMLLWIASFWLVGSWIIPFLAHKAGFRKETMTHRGQALYGLLGEVTEGLSGIAILHICLARFHPLPSDWFRLSLEGKWHFDVGLGCLMFPLVNRLSQINENLLPVAPSTPVTGSSVQQSIVARDPLAMALYAVFLSVCAPIWEEIFFRGFLLPSLTRYMPVWCSILVSSVAFASAHLNLQTMLPFIFLGMLIGAVFARSRNLLASMLLHSLWNAFVFVDLMKYESMSHHSMEDTALVSLTRYSFVGMEVVGEGEGEGEGGGMEASQPLSIESFSYSWLINLKPSFESLDDSLRTSLDVSDEASFIEMDPRMPPSKRFFRNSQDFNFDFPISQPPLSLVHADELFSNGLIMPIFMEPLKMEAYDGSYSLPATPISSSHAPKHVLSATNTHCSSLRRCRRLSKQILQKYLDFLRPLYRRIRGRRIGSRAESVNSRMQEGKSWVYSPEASPRTSTAYSTGDWRKSCDSESSIYEAVLHCKRSIGK* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1046 601 PANTHER CAAX AMINO TERMINAL PROTEASE 9 337 - -
Vvi16g1046 601 Pfam Type II CAAX prenyl endopeptidase Rce1-like 248 333 IPR003675 GO:0004222|GO:0016020|GO:0071586
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1046 Vvi-Chr16 18814460 18822012 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1046 K07052 - vvi:100254162 613.224