Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1043 ATGTTAGTCTTACTGCTGCTCATTTCTTTTGTAGCTCATATCAAGTGCACAAGCAGCTGGGCTTTTGATGAGAAACATCTTTTGCAGTCGCTTTACAAGGTCTTGGTTTCAGTATCGGAAACATGTTCCATGATTTTATACATCAGGGATGTTGACAAGCTTCTTCTGCAATCAGATAGATTTTACAAATTGTTCCGGAAAATGTTGGACAAATTATCGGGATCAGTTCTGATACTTGGTTCCCGCATGTTAGACCCTGATGATGAGGATAATGAAATGGATGAAAGGGTGAGTCTTTTATTCCCTTGCAATATTGAAATCGAGAAACCTGAGGATGAGACTCATCTTGATAGATGGGAAGCCCAACTGAAAGAGGAGACAAAGGTGATCCAGTTTCAGGACAACAAAAATTATATGGCTAAGGTGCTTGCAGCAAATGATCTTGACTGTGATGATTTGGGTTCAATCTGCTATGCAGACCCTGAAATTCTAAGTGATTACACAGAAGAGATTGTAATATCTGCAATATCTTATCATTTGTTGAATAACAAAGATCCAGAATACCGAAACGGAAAGCTTGTCATATCTTCTAAGAGTTTGTCTCATGGATTGAGTTTATTCCAGGAAGACGCACCAAATGCTGAATCTAAGGTATTTCCACGTTGCAATGAATTTGAGAGTCGTATAAGGCCAGAGGTTATCCCACCAAATCGGATAGGAGTGACATTTGATGACATCGGTGCCTTGGATGACATTAAAGAATCACTGGAGGAGTTGGTCATGTTCCCTCTTCAAAGACCAGAGATCTTCAAGGGTGGGCTTCTTAAGCCTTGCAGGGGGATACTACTCTTCGGGCCTCCTGGTACTGGAAAAACGATGCTGGCAAAGGCTATGGCCAATGAAGCTGGAGCAAGCTTCATCAATGTCTCAATGTCCACCATCACTTCAAAATGGTTTGGTGAAGATGAGAAGAATGTTCGAGCTCTGTTCACACTTGCGGCAAAGATCTCCCCAACTATTATTTTTGTGGATGAGGTTGATAGCATGCTTGGGCAGCGACTTGAATTTGGAGAGGATTGTAGTATGCGAAAGATTAAGAATGAATTCATGACACATTGGGATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGACCACAGAATTATGGTTGGTCTACCATCTGTGGAGAGCAGAGAGATGATCCTGAAGACTCTCTTGGCTAAAGAACAAGCCGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGAACTTGTGCATGGCAGCAGCTTATCGTCCTGTAAGGGAGCTAGCACAACAAGAGAGAATGAAGAAGGATAAAAAAAAGAAGCAGAAAGCTGATGAAGGAAAAAGCTCAGAGGATGCTTCGGATACCAGAGAAGAAGCCAAAGGGGAAAGGGTAATTGTTCTGAGACCCTTAAACATGGAAGACATGAGGCAGGCAAAGAATCAGGTTGCTGCTAGTTTTGCTTCTGATGGAGCGGCAATGAACAAGCTGAAGCAGTGGAATGAATTGTATGGAGAAGGCGGCTCAAGGAAGAAGGAACAGCTGACCTACTTTCTATAG 1674 0.4271 MLVLLLLISFVAHIKCTSSWAFDEKHLLQSLYKVLVSVSETCSMILYIRDVDKLLLQSDRFYKLFRKMLDKLSGSVLILGSRMLDPDDEDNEMDERVSLLFPCNIEIEKPEDETHLDRWEAQLKEETKVIQFQDNKNYMAKVLAANDLDCDDLGSICYADPEILSDYTEEIVISAISYHLLNNKDPEYRNGKLVISSKSLSHGLSLFQEDAPNAESKVFPRCNEFESRIRPEVIPPNRIGVTFDDIGALDDIKESLEELVMFPLQRPEIFKGGLLKPCRGILLFGPPGTGKTMLAKAMANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKISPTIIFVDEVDSMLGQRLEFGEDCSMRKIKNEFMTHWDGLLTKAGERVLVLAATNRPFDLDEAIIRRFDHRIMVGLPSVESREMILKTLLAKEQAEDLDFKELATMTEGYTGSDLKNLCMAAAYRPVRELAQQERMKKDKKKKQKADEGKSSEDASDTREEAKGERVIVLRPLNMEDMRQAKNQVAASFASDGAAMNKLKQWNELYGEGGSRKKEQLTYFL* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1043 557 SMART AAA_5 277 414 IPR003593 GO:0016887
Vvi16g1043 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 469 IPR027417 -
Vvi16g1043 557 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 240 415 - -
Vvi16g1043 557 Gene3D - 241 525 IPR027417 -
Vvi16g1043 557 Gene3D - 413 521 - -
Vvi16g1043 557 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 18 556 - -
Vvi16g1043 557 Pfam ATPase family associated with various cellular activities (AAA) 281 411 IPR003959 GO:0005524|GO:0016887
Vvi16g1043 557 Coils Coil 116 136 - -
Vvi16g1043 557 ProSitePatterns AAA-protein family signature. 384 403 IPR003960 GO:0005524|GO:0016887
Vvi16g1043 557 Pfam AAA+ lid domain 433 473 IPR041569 -
Vvi16g1043 557 MobiDBLite consensus disorder prediction 466 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1043 Vvi-Chr16 18756190 18759112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1043 202 520 Calmodulin-binding Proteins AT3G56690 35.294 1.21e-45 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1043 - - vvi:100247304 1070.84