Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1036 ATGGCAGAGAAAGACGCATACCCCTTGGCACCAGCCAATGGCCACGCCCGGAACGATGCAGAATCAGCTGCAGTCCATGCTGATGAGCTCCGCCGCAAGAAACGCATAAAATGTATCATATATCTTATTATTTTCGTGGTGTTTCAGAGTATAGTTATATTGGTTTTCGCCCTAACTGTGATGAAAGTCAAGAGCCCTAAGTTCAGGGTGCGGGAAGCTTCATTCAGTAGCTTTGAGGTTAATCCAGGAACCCCATCATTCTCCATGAAAATGAATGCTCAACTTGGAGTGAAGAACACAAACTTTGGACACTTCAAATTCGATAACAGTACTATTGTCTTCTCCTACATGGGGATACCAGTGGGGGAGGCTTTTGTTCCAAAGGCGAGAGCCCGAGCTAGAACCACAAAGAAGCTGACTGTAACAGTGGATCTGACCTCAACAGCTTTGGCAAGCATGAATTCACAGTTAGGGACTGATCTCAGTAGGGGGGTTTTGCCATTGACGAGCTCATCTAAGCTGAGTGGGAAGGTGCATCTGATGAAGGTGATGAAGAAGAAGAAGTCTGCTCAAATGAACTGCACCATGGAAGTCAACACCCAGCTGCAATCAATTCAGAATGTGAAATGCAAGTGA 636 0.4591 MAEKDAYPLAPANGHARNDAESAAVHADELRRKKRIKCIIYLIIFVVFQSIVILVFALTVMKVKSPKFRVREASFSSFEVNPGTPSFSMKMNAQLGVKNTNFGHFKFDNSTIVFSYMGIPVGEAFVPKARARARTTKKLTVTVDLTSTALASMNSQLGTDLSRGVLPLTSSSKLSGKVHLMKVMKKKKSAQMNCTMEVNTQLQSIQNVKCK* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1036 211 Gene3D - 54 200 - -
Vvi16g1036 211 Pfam Late embryogenesis abundant protein 95 195 IPR004864 -
Vvi16g1036 211 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 32 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1036 Vvi-Chr16 18721720 18722355 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1036 - - vvi:104882181 392.504