Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1035 ATGGCAGAGAAGGATCAACAGGTTTTTCCTATGGAGCCAACTAATGCTCAAGTCAATACTGATGAAGAGTCTGCCAGGGTTCATTCTGAAGTGCTTCGCCATAAGAAGCGCATGAGACGCCTAGGGTGTGTAGCTGCTTTCACCGTGTTGCTGACTGCTATTATTCTAGCCTTTGCACTAACTGTAATGCATATCAAGAATCCCAAGTTCCGGTTTCGTTCCATTGAGATTGAGGATCTCAGCCTCCGCTCGTCCACCACGACTCCATCATTCAGCATGAGGTTCGATGCAGAACTCACTGTCAAGAACCAGAATTTCGGCCCATTCAAGTATGACAAAACTGCCATTCCAATGTCTTATGGGGGCACCAAGGTTGGTGAGGCTTTTATTTCTAACGGTGAAGCAAAGGCAAGATCCACAAAAGTAATTAAGGTAACTGTGGACGTGACTTCAAACAATGTATCAAGTAATTCAAACTTGGCCAGTGATATAAATTCGGGGTTTTTGACTCTGACCGGCCAAGGCAAATTGAACGGGAAGGTGCATCTGATGAAGGTGTTTAAGAAGAAGAAATCCCCCCAAATGAATTGCACCATCAAAATTAATTTAGAGAACAAAGTGATCCAAGAATGGAAGTGCAATTAA 645 0.4357 MAEKDQQVFPMEPTNAQVNTDEESARVHSEVLRHKKRMRRLGCVAAFTVLLTAIILAFALTVMHIKNPKFRFRSIEIEDLSLRSSTTTPSFSMRFDAELTVKNQNFGPFKYDKTAIPMSYGGTKVGEAFISNGEAKARSTKVIKVTVDVTSNNVSSNSNLASDINSGFLTLTGQGKLNGKVHLMKVFKKKKSPQMNCTIKINLENKVIQEWKCN* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1035 214 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 37 204 - -
Vvi16g1035 214 Gene3D - 50 206 - -
Vvi16g1035 214 Pfam Late embryogenesis abundant protein 99 198 IPR004864 -
Vvi16g1035 214 SUPERFAMILY LEA14-like 50 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1035 Vvi-Chr16 18698075 18698719 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1035 - - vvi:104882182 239.965