Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1033 ATGATACCAAGATGCTTCAACAATTTCACTGCTATGGATCAGAAGGAGAATTTAGTCATTGGATACAACTATACAATCCCTTATTTCAAAGAGTTGTCACGTCGAAGCTCTTATATTGATGAGCAGTTGCTTCAATGGAAAGGAAGAGAACTTGAGTACAAGAGAACTCTTGGACTTGTAAAGAGTATCGATCTTTCAAGTAACAAACTAGGAGGGGAGATTCCTAGGGAGGTAACCGATCTTTTAGAATTGGTTTCATTGAATTTATCACGAAATAATTTGATAGGATTAATCCCTCCTACAATTGGTCAATTGAAAGCATTGGATGTTCTTGACTTGTCTCGAAATCAGCTTTTAGGTAAAATTCCTGATGGTCTTTCTGAAATAACTCGCCTAAGTGTCTTAGATCTATCAAACAACAACCTATTTGATAGAATTCCATTGGGCACTCAACTACAGAGTTTTAATTCTTCCACATATGAGGGAAATCCTCAACTTTGTGGTCTACCCCTTCTGAAAAAGTGTCCTGGAGATGAAATAAGGAAAGATTCCCCCACCATTGAAGGGTACATTCGAGAAGCGGCAAATGACTTATGGTTGTGTATTAGCATTGTACTTGGATTCATAATAGGATTTTGGGGAGTCTGTGGCACTTTAATACTCAAAACCTCATGGAGAATTGCGTATTTTGAATTTGTGACGAAAGCAAAAGATTACCTACTAAGGATTGCACGAAACTAA 741 0.3738 MIPRCFNNFTAMDQKENLVIGYNYTIPYFKELSRRSSYIDEQLLQWKGRELEYKRTLGLVKSIDLSSNKLGGEIPREVTDLLELVSLNLSRNNLIGLIPPTIGQLKALDVLDLSRNQLLGKIPDGLSEITRLSVLDLSNNNLFDRIPLGTQLQSFNSSTYEGNPQLCGLPLLKKCPGDEIRKDSPTIEGYIREAANDLWLCISIVLGFIIGFWGVCGTLILKTSWRIAYFEFVTKAKDYLLRIARN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1033 246 PANTHER OS10G0469600 PROTEIN 2 232 - -
Vvi16g1033 246 SUPERFAMILY L domain-like 27 170 - -
Vvi16g1033 246 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 53 175 - -
Vvi16g1033 246 PRINTS Leucine-rich repeat signature 108 121 - -
Vvi16g1033 246 PRINTS Leucine-rich repeat signature 129 142 - -
Vvi16g1033 246 Pfam Leucine rich repeat 84 142 IPR001611 GO:0005515
Vvi16g1033 246 Gene3D Ribonuclease Inhibitor 1 184 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1033 Vvi-Chr16 18687027 18687767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1033 38 177 Receptor kinase-like Gene Family AT2G32680 42.857 1.07e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1033 - K13466 vvi:104882119 321.242