Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1018 ATGACAAATGTGAACCTAAGCAAGGCATCAAATTGGCTACAAGTAATGAATAAGTTTCATTCTTTATCTGTGCTACGCTTGTCTTATTGTGAGCTTCATACTATTGACCCTCTCCCGCATGTCAATTTTTCATCTTTAGTCATCCTTGACCTTTCAATTAATTATTTTATGTCTTCATCATTTGATTGGTTTGCGAATCTTAATTCTCTTGTTACTCTTAATCTAGCATCTAGTTATATTCAAGGTCCAATTCCATCAGGTCTTCGTAACATGACTTCTCTTAGATTCCTAGATCTTTCCTATAACAATTTTGCTTCTTCTATTCCTGATTGGTTATATCATATAACTAGCCTTGAACACCTCGATCTTGGATCCCTTGACATTGTATCTAACAAGTTTCAAGGTAAGCTTCCAAATGATATTGGAAATCTCACTTCTATCACATATCTTGACCTATCATACAATGCTCTTGAAGGAGACGTGCTGAGATCTCTTGGAAATCTTTGTACTTTCCAACTTTCGAATTTGTCATATGATAGGCCTAGAAAAAGTCTAGAGTTTTTAAGCTTGAGGGGAAATAAACTTTCAGGTTCTTTTCCGGATACTCTTGGGGAATGTAAAAGTTTAGAGGGTTTAGACTTGGGAATGAATCAGCTTTCAGGTCATTTGCCCAATGAACTTGGTCAATTAGAAAGCTTGTCCTCTCTTTCTATTGATGGAAACTCGTTTTCTGGTCAGATTCCTGTCTCATTAGGAGGAATTTCATCCTTGCAAAGACTAGACCTCTCCAATAATTTATTCTGTGGATCTCTTTCACCCATGTTGTGTCGGAGAACTGATAAAGAAGTAAATTTATTGGAGTCTCTAGACATCTCAGGAAATCTTCTGTCAGGAGAACTTCCCAATTGTTGGATGTATTGGAGAGAATTGACGATGTTAAAATTGGGAAATAATAATCTGACGGGACATATACCTAGCTCCATGGGTTCTCTAATTTGGCTCGATTGCATATACACCGGGTCTAATGGTTCTTGTCCTTCATTCAAATAA 1050 0.3676 MTNVNLSKASNWLQVMNKFHSLSVLRLSYCELHTIDPLPHVNFSSLVILDLSINYFMSSSFDWFANLNSLVTLNLASSYIQGPIPSGLRNMTSLRFLDLSYNNFASSIPDWLYHITSLEHLDLGSLDIVSNKFQGKLPNDIGNLTSITYLDLSYNALEGDVLRSLGNLCTFQLSNLSYDRPRKSLEFLSLRGNKLSGSFPDTLGECKSLEGLDLGMNQLSGHLPNELGQLESLSSLSIDGNSFSGQIPVSLGGISSLQRLDLSNNLFCGSLSPMLCRRTDKEVNLLESLDISGNLLSGELPNCWMYWRELTMLKLGNNNLTGHIPSSMGSLIWLDCIYTGSNGSCPSFK* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1018 349 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 175 342 - -
Vvi16g1018 349 Pfam Leucine rich repeat 70 124 IPR001611 GO:0005515
Vvi16g1018 349 Pfam Leucine rich repeat 184 242 IPR001611 GO:0005515
Vvi16g1018 349 SUPERFAMILY RNI-like 14 338 - -
Vvi16g1018 349 Gene3D Ribonuclease Inhibitor 1 126 IPR032675 -
Vvi16g1018 349 Pfam Leucine Rich Repeat 286 303 IPR001611 GO:0005515
Vvi16g1018 349 Gene3D Ribonuclease Inhibitor 127 347 IPR032675 -
Vvi16g1018 349 FunFam Piriformospora indica-insensitive protein 2 180 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1018 Vvi-Chr16 18463813 18465390 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1018 14 347 Receptor kinase-like Gene Family AT1G08590 27.949 5.57e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1018 - - vvi:100262982 451.825