Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1016 ATGAGAATAGATATAAATAAATGGGATGAGATTTGGATGAGAGTGATCCATCTTGCTCCTTTACCATCCTTATCCAATGTCATCCTTGACCTTTCAAATAATTATTTTATTTCTATATCATTTGATCGGTTTGCTAATCTTAATTCTCTTGTTACTCTTAATCTAGCATTTAACAATATTCAGGGCCCAATTCCATCAAGTCTTCGTAACATGACTTCTCTTAGATTCCTAGATCTTTCTTATAACTACTTCACTTCTCCTATTCCTGATTGGTTATATCATATAACTAGCCTTGAACACCTCGATCTTGGATCCCTCAATACTGAGTCTAACAATTTTCATGGTATCGTTCCAAATGATATTGGAAATCTCACTTCTATCACATATCTTGACCTATCATACAATGCTCTTGAAGTGGAAATTTTTAGATCTCTAGGAAATCTTTGTAGTTTCCAACTTTTGAATTTTTTGTCCTCTCTTTCTATTGATAGAAACTCGTTTTCTGGTCATATTCCTATCTCATTAGGAGGAATTTCATCCTTGCGTTATCTACGAATTAGGGAAAACTTCTTCGAGGGTATTATATCTGAAAAGCACCTTGCCAATCTAACAAGTTTAGAAAAATTGGATGCATCTTCAAACTTGTTAACTTTGCAAGTCAGCTCCAACTGGACTCCTCCTTTTCAACTCAGAGCATTAGACTTGGGGTCTTGCCTTCTAGGGCCTCAATTTCCTGCATGGCTTCAAACACAGAAGCATTTGGAATATCTAAACATGTCCTATGCAGGAATCTCCGGTGTCATCCCAGCTTGGTTTTGGACTCGATTCCTTAGGACTGTAGATCTATCTCACAACCAAATCATTGGTAGTATTCCAAGTTTACATTCATCCTATATCTATCTCGGCTCAAACAATTTCACTGATCCACTGCCCCCAATCCCTTCTGATGTAGCACAACTAGACCTCTCCAATAATTTATTCCGTGGATCTCTTTCACCTATGTTGTGTCGGAGAACTAAAAAGGTAAATTTATTGGAGTATCTAGACATCTCAGGAAATCTTCTGTCAGGAGAACTTCCCAATTGTTGGATGTATTGGAGAGAATTGATGATGTTAAAATTGGGAAATAATAATCTGACGGGACATATACCTAGCTCCATGGGTTCTTTAATTTGGCTCGGTTCATTGCACTTGCGCAACAACCATCTCTCCGGAAATTTTCCACTTCCATTGAAAAATTGCTCTAGTCTAATGGTTCTAGACCTTAGTAAGAATGAATTCACTGGGACGATACCAGCATGGATGGGGAACTTCAATGGAAAGTTCATTGAAATATTTCCAGGGGATGGTGAGATTACATATACACCGGGTCTAACGGTTCTTGTCCTTCATTCAAATAAGTTCACTGGAAGTATTCCTCTTGAACTCTGCCACCTTGATTCCCTTCAAATCCTGGACTTGGGAAACAACAATCTCTCGGGAACCATTCCTAGATGCTTTGGTAATTTCAGCAGCATGACCAAACAATCAAATTCAAGTTCCCCCTTTCGTTTTCATAATGAAGATTTTATTTATGCGGGATCAATTGACACAGCAATACTGGTTATGAAAGGAGTAGAGTACGAGTACGACAATACACTTGGCCTCCTAGCTGGCATGGACCTCTCAAGCAATAAGTTATCTGGTGAGATCCCAGAAGAACTCACAGATCTCCATGGGTTGATATGTTAG 1731 0.3847 MRIDINKWDEIWMRVIHLAPLPSLSNVILDLSNNYFISISFDRFANLNSLVTLNLAFNNIQGPIPSSLRNMTSLRFLDLSYNYFTSPIPDWLYHITSLEHLDLGSLNTESNNFHGIVPNDIGNLTSITYLDLSYNALEVEIFRSLGNLCSFQLLNFLSSLSIDRNSFSGHIPISLGGISSLRYLRIRENFFEGIISEKHLANLTSLEKLDASSNLLTLQVSSNWTPPFQLRALDLGSCLLGPQFPAWLQTQKHLEYLNMSYAGISGVIPAWFWTRFLRTVDLSHNQIIGSIPSLHSSYIYLGSNNFTDPLPPIPSDVAQLDLSNNLFRGSLSPMLCRRTKKVNLLEYLDISGNLLSGELPNCWMYWRELMMLKLGNNNLTGHIPSSMGSLIWLGSLHLRNNHLSGNFPLPLKNCSSLMVLDLSKNEFTGTIPAWMGNFNGKFIEIFPGDGEITYTPGLTVLVLHSNKFTGSIPLELCHLDSLQILDLGNNNLSGTIPRCFGNFSSMTKQSNSSSPFRFHNEDFIYAGSIDTAILVMKGVEYEYDNTLGLLAGMDLSSNKLSGEIPEELTDLHGLIC* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1016 576 SUPERFAMILY L domain-like 14 307 - -
Vvi16g1016 576 Gene3D Ribonuclease Inhibitor 154 296 IPR032675 -
Vvi16g1016 576 Pfam Leucine rich repeat 28 83 IPR001611 GO:0005515
Vvi16g1016 576 Pfam Leucine Rich Repeat 481 503 IPR001611 GO:0005515
Vvi16g1016 576 Pfam Leucine Rich Repeat 345 362 IPR001611 GO:0005515
Vvi16g1016 576 Gene3D Ribonuclease Inhibitor 14 106 IPR032675 -
Vvi16g1016 576 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 294 508 - -
Vvi16g1016 576 PANTHER LRR RECEPTOR-LIKE KINASE 25 103 - -
Vvi16g1016 576 SUPERFAMILY L domain-like 230 516 - -
Vvi16g1016 576 Gene3D Ribonuclease Inhibitor 107 153 IPR032675 -
Vvi16g1016 576 Gene3D Ribonuclease Inhibitor 312 444 IPR032675 -
Vvi16g1016 576 FunFam LRR receptor-like serine/threonine-protein kinase GSO2 199 293 - -
Vvi16g1016 576 Gene3D Ribonuclease Inhibitor 449 576 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1016 Vvi-Chr16 18445146 18448567 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1016 12 574 Receptor kinase-like Gene Family AT4G04220 30.960 3.36e-57 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1016 - - vri:117933376 853.203