Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1014 ATGATATGGAGAACAACTGTATCCAAGATACCCAGCAAAATTGAGTACTCACTCCTCAAAGACATTGTCTCATTCTGCAACTCAAGGTCCGTACGAGATGGGATTTGCATTCACAGTCCCATTATCAAAATGGGTTTTCAAGAAGACATGTTTCTTAGTAACAATCTGTTGTCTCTATATGGAAAGTGTTTTGGAGTGGCAGAAGCACGCCAATTGTTCGATGAAATGCCTTGTAGAGATGTTGCGTCTTGGACAATGCTCATGTCCGCTTATGGGAAAATTGGAAACCATGAAGAGGCTCTTGAACTGTTTGACTCAATGTTGATTTCTGGGGAATACCCAAATGAGTTTACGCTCTCGACTGCATTGCGGTCGTGTTCTGCTTTGAGGGAATTCAATCATGGGACTCGATTTCAGGCGCTTGTGACAAAGTCTGGGTTTGATTCAAATCCGGTTTTAGGCAGTGCTTTGATTGATTTTTACTCCAAATGTGGGTGTACTCAAGAAGCATACAGAGTATTTGAGTATATGAACAATGGGGATATTGTTTCTTGGACTATGATGGTGTCTTCCTTTGTTGAAGCAGGGAGTTGGAGTCAAGCTTTACAACTTTATCACCGAATGATCCAAACTGGGGTTGCTCCAAATGAGTTTACCTTTGTGAAGCTTTTGGCTGCATCCAGTTTTCTTGGTTTGAATTATGGGAAATTAGTGCACGCCCATTTGATGATGTGGCGGATTGAACTGAATTTGGTTTTGAAGACAGCCCTTGTAGATATGTACTGTAAATGCCAGAGCATAGAGGATGCTGTCAAGGTTTCAAAACTGACTCTAGAATATGATGTATTTTTGTGGACTGCCATCATCTCTGGTTTCACTCAAAGCTTGAAGTTCAGGGAGGCTATCACTGCATTTCATGAGATGGAGACCTCTGGAGTTGTACCGAATAATTTTACCTATTCTGGTATCCTGAATGCTTGTTCATCAATCCTGGCACTGGACTTGGGTAAACAGATTCACTCAAGGGTTGTCATGGCTGGATTGGAGAATGATGTCTCTGTTGGAAATTCACTTGTCGACATGTATATGAAATGTTCCAACATGATAGAAGATGCTGTGAGGGCATTTAGAGGGATAGCATCACCCAATGTCATCTCTTGGACCTCTCTGATTGCTGGTTTTTCTGAACATGGACTTGAGGAAGAATCGATTAAGGTGTTTGGAGCAATGCAAGGTGTAGGGGTGCGACCAAATTCCTTTACGCTCTCTACTATCCTTGGAGCTTGTGGAACAATAAAGTCTCTAACTCAAACAAGGAAGCTTCACGGGTATATAATTAAAAACAATGCGGATAATGATGTAGTCGTTGGCAATGCTCTTGTAGATGCTTATGCTGGATTGGGGATGGTGGATGATGCATGGCATGTGACCAGTATGATGAAGCATAGAGATGTCATCACATACACAAGCTTAGCCACAAGAATAAATCAGACAGGTAATCATGAAATGGCATTAAACATCATCACTCACATGAACAAGGATGATGTTAGAATGGATGGATTCAGTCTCGCAAGCTTCTTATCCGCAGCAGCAGGTATACCGATAATGGAAACTGGAAAGCAGCTTCACTGTTACTCTGTCAAGTCTGGCTTAGGCAGCTGGATTTCAGTCTCAAATGGCCTGGTTGACTTGTATGGGAAATGTGGATGCATACATGATGCACATAGATCTTTTCTGGAAATTACTGAGCCGGATGCCGTATCATGGAATGGGTTAATATTTGGATTGGCATCAAATGGGCATGTCTCATCTGCCTTATCTGCCTTTGAAGATATGAGGTTAGCTGGAGTTGAACCAGATCAGATTACATGCTTGTTAGTACTTTACGCTTGCAGTCATGGCGGCTTGGTTGATATGGGGTTGGACTATTTCCAATCTATGAGAGAAAAACATGGTATCAGACCACAACTAGATCACTATGTTTGTTTAGTTGATCTCCTTGGTCGAGCAGGCCGGCTAGAGGAGGCCATGAATGTAATAGAAACCATGCCTTTCAAACCAGATGCATTGATCTACAAAACACTATTGGGTGCCTGCAAACTACATGGGAACATACCTCTTGGGGAACATATGGCAAGACAAGGCCTCGAGCTCGACCCTTCTGATCCAGCATTCTATGTACTGCTTGCTAACCTGTATGATGATTCTGGCCGGTCTGAGCTAGGGGAGAAAACTCGGAGGATGATGAGGGAGAGAGGCGTGAGGAAGAATCCTGGTCAGAGCTGGATGGAGGAGAGGAACATGGTTCATCTCTTCACAGCAGGAGATACATCACATCCACAGATAGGTAAGATTCATGAAAAGATTGAATCACTGATAGCTCAGTTTAGGAATCAGGGAATTTGGTATCAAGAAAATAGAGCTTTGGCCCATCACAGTGAGAAGTTGGCTGTTGCATTCGGCCTTATCAGTACACCACCAAAAGCTCCAATACGCATTATTAAGAACATTCGCATTTGCAGAGATTGTCATGACTTTATAATGAACGTGACTAGGTTGGTTGATAGAGAGATCATTGTGAGGGATGGGAACCGCTTCCATTCCTTCAAGAAAGGTGAGTGCTCATGTAGAGGCTATTGGTAG 2643 0.4279 MIWRTTVSKIPSKIEYSLLKDIVSFCNSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERGVRKNPGQSWMEERNMVHLFTAGDTSHPQIGKIHEKIESLIAQFRNQGIWYQENRALAHHSEKLAVAFGLISTPPKAPIRIIKNIRICRDCHDFIMNVTRLVDREIIVRDGNRFHSFKKGECSCRGYW* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1014 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Vvi16g1014 880 Pfam PPR repeat family 584 631 IPR002885 -
Vvi16g1014 880 Pfam PPR repeat family 80 126 IPR002885 -
Vvi16g1014 880 Pfam PPR repeat family 382 429 IPR002885 -
Vvi16g1014 880 Pfam PPR repeat family 181 224 IPR002885 -
Vvi16g1014 880 Pfam PPR repeat family 281 328 IPR002885 -
Vvi16g1014 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 585 619 IPR002885 -
Vvi16g1014 880 Pfam PPR repeat 458 484 IPR002885 -
Vvi16g1014 880 Pfam PPR repeat 660 683 IPR002885 -
Vvi16g1014 880 Pfam PPR repeat 155 177 IPR002885 -
Vvi16g1014 880 Pfam E motif 702 764 IPR046848 -
Vvi16g1014 880 Pfam DYW family of nucleic acid deaminases 806 880 IPR032867 GO:0008270
Vvi16g1014 880 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 27 429 IPR046960 GO:0003723|GO:0009451
Vvi16g1014 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Vvi16g1014 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Vvi16g1014 880 FunFam Pentatricopeptide repeat-containing protein At4g14850 135 233 - -
Vvi16g1014 880 FunFam Pentatricopeptide repeat-containing protein 335 437 - -
Vvi16g1014 880 FunFam Pentatricopeptide repeat-containing protein At5g52850, chloroplastic 557 787 - -
Vvi16g1014 880 FunFam Pentatricopeptide repeat-containing protein At3g13880 236 334 - -
Vvi16g1014 880 NCBIfam pentatricopeptide repeat 587 620 IPR002885 -
Vvi16g1014 880 NCBIfam pentatricopeptide repeat 183 217 IPR002885 -
Vvi16g1014 880 NCBIfam pentatricopeptide repeat 385 418 IPR002885 -
Vvi16g1014 880 NCBIfam pentatricopeptide repeat 83 116 IPR002885 -
Vvi16g1014 880 NCBIfam pentatricopeptide repeat 284 316 IPR002885 -
Vvi16g1014 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Vvi16g1014 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 114 IPR002885 -
Vvi16g1014 880 FunFam Pentatricopeptide repeat-containing protein At5g52850, chloroplastic 43 131 - -
Vvi16g1014 880 Gene3D Tetratricopeptide repeat domain 533 791 IPR011990 GO:0005515
Vvi16g1014 880 SUPERFAMILY TPR-like 50 738 IPR011990 GO:0005515
Vvi16g1014 880 FunFam Pentatricopeptide repeat-containing protein chloroplastic 438 551 - -
Vvi16g1014 880 Gene3D Tetratricopeptide repeat domain 137 232 IPR011990 GO:0005515
Vvi16g1014 880 Gene3D Tetratricopeptide repeat domain 438 532 IPR011990 GO:0005515
Vvi16g1014 880 Gene3D Tetratricopeptide repeat domain 233 331 IPR011990 GO:0005515
Vvi16g1014 880 Gene3D Tetratricopeptide repeat domain 332 437 IPR011990 GO:0005515
Vvi16g1014 880 Gene3D Tetratricopeptide repeat domain 4 136 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1014 Vvi-Chr16 18393312 18395954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1014 95 880 Glycoside Hydrolase AT3G49170 35.092 2.91e-168 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1014 - - vvi:100254325 1758.42