Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1010 ATGGCTGCTTCAGAAGAGAACAGTGCATTGTTCCCAATTTTCATATTGACTATAATGGCCCTCCCTTTGGTGCCTTACACTATAATGAAGTTATGCCATGCTGCCTCCAGGAAAACAAAGAGCATCCACTGCCAGTGTTCTGAATGCACTCGTTCTGGGAAGTACCGCAGATCAATATTTAAGCGGATCTCAAACTTCTCGACATGTAGCAACTTAACCCTGGTGCTACTTTGGGTCGTCATGATCATCTTGGTTTATTACATTAAACACATAAGCCAAGAGATTCAAATATTTGAGCCATTTAGCATTCTTGGATTAGAATCTGGAGCTTCAGATTCAGAAATAAAGAAGGCATACAGGAGACTCTCGATTCAATACCATCCTGATAAAAATCCGGATCCAGAGGCCCACAAATATTTTGTGGAGTTCATATCTAAGGCTTATCAGGCTCTCACAGATCCAATCTCACGTGAGAATTATGAAAAGTATGGCCATCCTGATGGTAGGCAGGGATTTCAAATGGGCATAGCTCTCCCTCAGTTCCTGTTAAACTTTGATGGAGCAACTGGTGGAATTCTTTTACTTTGGATTGTTGGTGTTTGTATTCTCTTGCCACTGGTGATAGCTGTTGTTTATCTATCAAGATCAGCAAAATATACTGGGAACTATGTCATGCATCAAACTCTGTCTACTTACTATTACTTCATGAAACCTTCTTTGGCCCCAAGCAAAGTTATGGATGTCTTCATTAAGGCTGCAGAATACATGGAAATTCCAGTCCGTAGGACTGACAATGAGCCCCTTCAGAAACTGTTCATGTTAGTAAGGAGTGAGTTAAACTTGGACCTTAAGAACATTAAGCAAGAGCAGGCAAAGTTTTGGAAGCAGCATCCATCACTAGTTAAGACAGAATTGTTGATTCAGGCGCAATTAACTCGTGAATCAGCAACCTTATCACCTGCGTTGCTAGGTGATTTCAGACGTGTGCTGGAACTCTCACCTCGCCTTCTTGAAGAACTAATGAAGATGGCAGTTGTACAACGCACTTCTCAAGGACATGGATGGTTGAGGCCTGCAATTGGTGTTGTTGAGCTTTCTCAATGTATCATTCAGGCTGTTCCTCTCAGTGCAAAAAAGGCAGCTGGAGGATCTCCTGAAGGCATTGCACCCTTTCTGCAGTTGCCGCATTTCAGTGAGGCTATTATAAAAAAGATAGCCCGTAAGAAAGTGCGGACATTTCAGGAGCTCTCAGACATGCCCCTGCAGGAGCGTGCTGAGCTGCTTACTCAAACAGCTGGTTTCTCTTCTGCTGAAATACAAGATGTTGAGATGGTACTGGAAATGATGCCTTCCATAACGATCATAGTTACATGTGAGACTGAAGGCGAAGAGGGTATACAAGAGGGTGACATTGTCACAGTTCAGGCCTGGGTAACACTCAAACGAACTAATGGCCTCATTGGTGCCCTCCCTCATGCGCCCTACTTCCCATTTCACAAAGAAGAAAATTTCTGGTTCCTGCTTGCAGACCCCGTGTCCAATAATGTCTGGTTTTCCCAGAAGATGAGTTTCATGGATGAAGCTGCAGCTATAACTGCTGCCTCAAAGGCAATTGAGGATACAATGGAGGGATCTGGAGCAAGCGTGAAGGAAACAAGTGCAGCAGTCAGAGAAGCAGTCGACAAGGTGAAGGCTGGCTCCCGACTGGTTATGGGGAAGTTGCAGGCCCCTGCAGAGGGGAATTATAACTTGAGCTGTTTCTGCTTGTGCGACTCTTGGATTGGCTGTGACAAAAAGATCAACTTAAAGGTGAAAGTTGTGAAACGGACTAGGGCTGGCACCAGGGGAGGTCCTGTGGCAGAAGAGGGACCTATTTTGGAGGATGGGGTCGAGGAGGAAGAAGAGGATGAAGGAGAGGAATATGATGATTATGAGAGTGAATACAGTGAAGATGATGCAGACGAACAGCGAACGAGTAAGAAAGGTGCTGTTGCCAATGGCAAGGCACATAATAAAGGCAGCCAAAACCGGTCAAGTTCAGAGTCTTCAGGCACAGATGAAGAGTGA 2067 0.4475 MAASEENSALFPIFILTIMALPLVPYTIMKLCHAASRKTKSIHCQCSECTRSGKYRRSIFKRISNFSTCSNLTLVLLWVVMIILVYYIKHISQEIQIFEPFSILGLESGASDSEIKKAYRRLSIQYHPDKNPDPEAHKYFVEFISKAYQALTDPISRENYEKYGHPDGRQGFQMGIALPQFLLNFDGATGGILLLWIVGVCILLPLVIAVVYLSRSAKYTGNYVMHQTLSTYYYFMKPSLAPSKVMDVFIKAAEYMEIPVRRTDNEPLQKLFMLVRSELNLDLKNIKQEQAKFWKQHPSLVKTELLIQAQLTRESATLSPALLGDFRRVLELSPRLLEELMKMAVVQRTSQGHGWLRPAIGVVELSQCIIQAVPLSAKKAAGGSPEGIAPFLQLPHFSEAIIKKIARKKVRTFQELSDMPLQERAELLTQTAGFSSAEIQDVEMVLEMMPSITIIVTCETEGEEGIQEGDIVTVQAWVTLKRTNGLIGALPHAPYFPFHKEENFWFLLADPVSNNVWFSQKMSFMDEAAAITAASKAIEDTMEGSGASVKETSAAVREAVDKVKAGSRLVMGKLQAPAEGNYNLSCFCLCDSWIGCDKKINLKVKVVKRTRAGTRGGPVAEEGPILEDGVEEEEEDEGEEYDDYESEYSEDDADEQRTSKKGAVANGKAHNKGSQNRSSSESSGTDEE* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1010 688 MobiDBLite consensus disorder prediction 614 688 - -
Vvi16g1010 688 Pfam Sec63 Brl domain 222 602 IPR004179 -
Vvi16g1010 688 PANTHER SEC63 DOMAIN-CONTAINING 4 651 - -
Vvi16g1010 688 PRINTS DnaJ domain signature 119 134 IPR001623 -
Vvi16g1010 688 PRINTS DnaJ domain signature 101 119 IPR001623 -
Vvi16g1010 688 PRINTS DnaJ domain signature 136 156 IPR001623 -
Vvi16g1010 688 PRINTS DnaJ domain signature 156 175 IPR001623 -
Vvi16g1010 688 SUPERFAMILY Chaperone J-domain 97 194 IPR036869 -
Vvi16g1010 688 Gene3D - 225 373 - -
Vvi16g1010 688 MobiDBLite consensus disorder prediction 625 652 - -
Vvi16g1010 688 Pfam DnaJ domain 100 161 IPR001623 -
Vvi16g1010 688 FunFam DnaJ protein ERDJ2A 225 373 - -
Vvi16g1010 688 FunFam DnaJ protein ERDJ2A 389 448 - -
Vvi16g1010 688 Gene3D - 389 448 - -
Vvi16g1010 688 SMART Sec63_2 209 604 IPR004179 -
Vvi16g1010 688 SUPERFAMILY Sec63 N-terminal domain-like 244 450 - -
Vvi16g1010 688 ProSiteProfiles dnaJ domain profile. 99 164 IPR001623 -
Vvi16g1010 688 FunFam DnaJ protein ERDJ2A 98 180 - -
Vvi16g1010 688 SMART dnaj_3 98 156 IPR001623 -
Vvi16g1010 688 Gene3D DnaJ domain 99 187 IPR036869 -
Vvi16g1010 688 SUPERFAMILY E set domains 457 608 IPR014756 -
Vvi16g1010 688 CDD DnaJ 99 153 IPR001623 -
Vvi16g1010 688 Gene3D C2 domain 450 613 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1010 Vvi-Chr16 18329026 18336276 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1010 K09540 - vvi:100254350 1286.17