Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1009 ATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTGGTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACCAGACAAAGAATTGGGACCATCTCCAAATCGGCAAAGCTTGTGGATTGTATAAAGGGGTTATCAAATGTCAAAGAGGAAGTTTATGGGGCTCTTGATTCTTTCATTGCTTGGGAGTTGGAATTCCCTTTAATCACAGTGAAGAAAGCTTTGAAGACCCTTGAGGATCAAAAAGAATGGAAGAGGATAATTCAGGTGACGAAGTGGATGTTAAGCAAAGGTCAAGGGAGAACAATGGGGAGCTATTTCACACTGCTGAATGCTTTGGCAGAGGATGGGAGGCTTGATGAAGCCGAAGAGCTTTGGACGAAGCTGTTCTCAGAGAACTTGGAAAGTCTGCCTCGTGTTTTCTATGATAAAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAGATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTTAAAATGGTTGGAGATGTATTCCAGAAGCTGGGTATGTTAGACAAATACGAGAAACTACAGAAGAAATACCCACCACCAAAATGGGAATACCGGTATATCAAAGGAAAGCGCGTTAGAATTCGAGCAAAACTGACTGGTGAATCCGATGATCCTGGTGAGGCTGAATCTGATGATCCTGGTGAGGCTGTAAATGAAATCAATGACAAAACTGAGAATTCAAATGAAATGCATGATGAAGCAGATAGTTCTGTAGATGATGCAGATGAACCAATTTATGAAGCTCACAACTCTTCTTGA 888 0.4279 MLCLRYSPATITRRLDAVEIPKNPRSIVVCGAKGPRPRYPRVWKTRQRIGTISKSAKLVDCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEDQKEWKRIIQVTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWTKLFSENLESLPRVFYDKMISIYYRRDMHEKMFEIFADMEELGIRPNTSIVKMVGDVFQKLGMLDKYEKLQKKYPPPKWEYRYIKGKRVRIRAKLTGESDDPGEAESDDPGEAVNEINDKTENSNEMHDEADSSVDDADEPIYEAHNSS* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1009 295 NCBIfam pentatricopeptide repeat 162 194 IPR002885 -
Vvi16g1009 295 PANTHER OS01G0757700 PROTEIN 21 275 IPR044646 -
Vvi16g1009 295 MobiDBLite consensus disorder prediction 259 277 - -
Vvi16g1009 295 Pfam PPR repeat 162 190 IPR002885 -
Vvi16g1009 295 Pfam PPR repeat 128 151 IPR002885 -
Vvi16g1009 295 MobiDBLite consensus disorder prediction 241 295 - -
Vvi16g1009 295 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Vvi16g1009 295 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 156 IPR002885 -
Vvi16g1009 295 Gene3D Tetratricopeptide repeat domain 54 223 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1009 Vvi-Chr16 18325525 18328635 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1009 - - vvi:100247467 591.652