Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1008 ATGATCGAATCAACCATGGCCTTTCGATTCCGCGCCGGCGCCGGTGCCCGTGCCGGACTCTTCTCCACCGCCGCCGTCTCTAATTGTCGTGCCACGTGGAGTTCTGATGAAGCTCCGGGAGTCCATGTCGCCTCCCGCCGGCTATCTCACTCCGGCAGCTTTGATGCACCTCGGACTAGATTTATAGGAGTAACCAGTGGATCTTTCACAAAAAGGCGAAATCCCGTGAAGCATAGGTTTCGGGTATCTGCTGAGCATTTGGGTTCGAGGGAGCCGCAGTACCATCCATTTGAAGAGATTGTGGAATCATCATTTCCGGAGAGTGGAGAAGCTAGACTTACAGCTGCTGAAACTACTAGGACTGTTATTGAGGTCAACAACAAAGCAACACTAATGTTTTCAAATTTAATCAATAATGAAGTTCATGAGAACATTTTCTGGCCAGAGTTGCCGTATGTAACAGATGAACATGGAAATATTTACTTTCAGGTGAACAACGATGAAGACATTATGCAATCCCTAACTTCTGAAAATAACTTTGTGCAAGTTATTATAGGCTTGGATACCTCGGAAATGCTCAATGAGATGGAGTTAACAGGTCCAGCAGAAATTGATTTTGGGATTGAGGAAATTGAAGATGAAGATAGCGATCTTGATTACGAGGATGATGAGAATGATGATGATGATGATGATGATGATGAGGATGATGAACAGGACTGGGTAGCTATTCTTGAAGATGAGGAAGATCAGGAGGATTCTGATGAGGCAGTTGGAGACTGGGCAAAATTGGAAACTATGCGTTCTTCTCATCCAATGTTTTTTGCTAAAACAATGGCAGAGGTTGCATCAGGGGATCCTGTTGATTGGATGAATCAGCCTCCAGCTGGTATTGCCATCCAAGGCCTTCTAAGACCTGCCTTTATAGAAGAACAATCTGTCATCCAAAAGCATATATCTAGCCACCAATCCAGTAATGCTAATGTAAATCAGGTTGAGAAAAATTCAGAAGACAAAGCAGAAGATCTTGAAAAGATTAATGGTCATGGACAGGAATCAGGATCATCTAGAGATAATTCAATCCAGGCAGAAGATATAGAGAAAGACCACAACATGATGAATGGGTTTTCATTTTACAAACTGGAGATGATTAAAATACTGCTGATTTCAGCTCATGGACTTCAGGCTGTCGTTGACCTAGAAGATTTCAGGAATGCTCAACCTGATGCCATTGCACATTCAGCAAGCAAAATTATATCTCGCTTAAAAGCTGGTGGAGAAAAGACCACACAAGCTCTCAAATCTTTGTGTTGGAGATGTAAGGGTATTCAAGTGGAGGAGGCAACACTTATTGATGTGGATACCCTTGGTTTTGACTTGAGAGTTTGTTCAGGAAGGCAAGTCCAAACATTGCGGTTTACATTTAATACACGGGCTACATCGGAGTACAGTGCTGAGAGACAGCTTAACGATCTACTATTCCCCAGGATCCACCAAAAGACACAAAAAAAGAAACAAGCTCAACAAAAAGAATACTAA 1536 0.4271 MIESTMAFRFRAGAGARAGLFSTAAVSNCRATWSSDEAPGVHVASRRLSHSGSFDAPRTRFIGVTSGSFTKRRNPVKHRFRVSAEHLGSREPQYHPFEEIVESSFPESGEARLTAAETTRTVIEVNNKATLMFSNLINNEVHENIFWPELPYVTDEHGNIYFQVNNDEDIMQSLTSENNFVQVIIGLDTSEMLNEMELTGPAEIDFGIEEIEDEDSDLDYEDDENDDDDDDDDEDDEQDWVAILEDEEDQEDSDEAVGDWAKLETMRSSHPMFFAKTMAEVASGDPVDWMNQPPAGIAIQGLLRPAFIEEQSVIQKHISSHQSSNANVNQVEKNSEDKAEDLEKINGHGQESGSSRDNSIQAEDIEKDHNMMNGFSFYKLEMIKILLISAHGLQAVVDLEDFRNAQPDAIAHSASKIISRLKAGGEKTTQALKSLCWRCKGIQVEEATLIDVDTLGFDLRVCSGRQVQTLRFTFNTRATSEYSAERQLNDLLFPRIHQKTQKKKQAQQKEY* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1008 511 MobiDBLite consensus disorder prediction 213 236 - -
Vvi16g1008 511 SUPERFAMILY FMN-binding split barrel 373 492 - -
Vvi16g1008 511 MobiDBLite consensus disorder prediction 318 332 - -
Vvi16g1008 511 Gene3D - 406 510 IPR037119 -
Vvi16g1008 511 PANTHER CREG1 PROTEIN 68 495 - -
Vvi16g1008 511 MobiDBLite consensus disorder prediction 318 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1008 Vvi-Chr16 18318188 18324425 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1008 - - vvi:100252576 896.73