Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1006 ATGGAGTGCAGGAAGTTCCAGATTGCCATTCTTTCAGCTCAAGGTCTTGAGAACGTCCGAGAAATATTCAGAATGAAAGTCTACGCCCAGCTTTCAATCCCCGGCAATCCCCAAATAAAGAGAGAAACCCCAGTGGACACAGAGGGGGAGACCAACCCCGCATGGAACTCCACCATTAGATTCACAATAGGCAATCAGGCAGTCGAACACCAAGGCGTCGTGTTCGTCATCAAGCTATACTGCAGCCGGGCCCTAGGAGACCGGTACATCGGTGAGGTGAGCCTATCTTTCAAGGACCTGTTTGATGGTGCCGCACCCACCAGCCAAGGCCGCAGCAGCGGTATTGTAAGTTACCCAGTGAAAAAGGGTGGAGCGGATTCACAGGGGGTATTGAACTTTTCATACTCTTTTGGGGATATAGTGATGGTTAAGAAACCATCCCTTTTCTCGACCAGAAATTTGGCAGTTGCAGAATCTGCTATCAGAGAAAGAAAACGGAATAAAGAAAAATTGAAGCAAGCAGGTTCAACTCATGTGGCCTCTACATATTCTGATGTTCAATCTCCAGGATCAGCTGGAGAAAGACATCAAAACGCAAACAATGTGCAGCCCTGCATGAAGGAACTTGGTCCTAGAACAGTTGAAGCAGAGAGGTTTAATTGTCACATTTCTCCAGTCATATTTTATGGATCTCCACATGGTGTGCCTCCAAAAAGGCCATCCAGTTTGTTGCGATTATTACGTGAAATACGTGTTGAGCTCAGTGAACAAAATAAATCAGACCTGAGGGAGGAAGTATGGGCTACATTTCCAAGACAGGATGAATCAATTAAGTTTGCACAAGGACATGCTGATGTGCATATTTTCAGTTATCAGGATCACTTGAATGGACAAAGAAGATTCCTGGTTTCAACATACAAGGAGTTCTGGCAAAGGTACAAAAATATGGATTCTAAGTTCCGCCATCATTATGAAGTGATTCAAGAGGGTTTCCCATGTCACCTTTATTTTGATTTGGAGTTCAATAAGAAAGACAATGCAGAAAAAGATGGAGATGAAATGGTTGATCTCTTGATCTCAGTTGTTTCAGAAGCCTTACTGGAGAAATACTCTATTCAAGTAAATGAGAAATGGATAGTAGAGCTTGATTCCTCCACTGGAGAAAAATTTTCACGTCATCTAATTATTCGCATACCAAAGATTGCCTTCAAGGACAACTCACATGCTGGTGTATTTGTTGCTGAGATATGCTCACAGATTTCAAGTGCAGGGGAGGGGGATGGAAATTTTAAGAAGTTGTTTATTTCAAAAGGATCAACCTCTGCTGAGTTCCCCTGCCAGCTTTTTGTAGACACTGCTGTTTATTCCAGAAATCGCTGCTTTCGGTTAGCTCTATCATCCAAGGCTGGGAAGAATTCAGTGCTTCTACCTACGGGGCGTTTCAAATGCAAGGACATGTGTGAGGAAGAAATGTTCATGGCATCCTTGATCTGCAATATTGATGTTGACTGTGAGAAGTTTCTAGTCTGTAAAATGGATTTAAATTGTGTGAAGACCCTACATTTTGATATGGAGGAGAACCATAATTGTAGAAAACATTCCAGCTCCCCTCAAGACTTTGCATTGAGTGCTTGCACAAGCAATGTTTCAGGCACATGCTTCATGGGAAATTCACCATTCCCAGCTTTGGATATATTTGTAGAATCAATTGCCTCCATTGGAAATGTATCAGGAAAAATTCGAAGCTGGTATTGGTTCTCTGAATACAGATTGATGGTCTACAGCATGTCAAGAAATAGATACTGTGAGCGAATTGGCAGACAGCATAAAAGCAATCATGTTATCTATGTTGTTGACCTCAGAAGGGCTATTTTTTATCAGAAATGTCATGATCCAGATTGCAGAGGTTATCGATCTCCCTCGCGTCCAATACCAATGGATGTCATTCCCAATACAGCAGTTCTCATGGATTCAGTACAGACAGAGCATCATGTAGAGTCAACCAGCAATCACCTTGGATACAGTCTTGTGGAAAATGATCAGGAATGTGTTTCACTTTACAATGACAAAAGCATTACCGACAGCTGCAAGAAAGATGCATGGTGGCTTGAAGCCATAAGATTTGCAGATAATGTCGAAAGTGTGCAACATATGCGAGACCTCAGTGACACGGAAAACATAGATGATGAAGACGATGATTGGTGGATGGCTGCTGAAAGGACTGCTTCCCAGACTGAACAAACCTACTTCAACCACAAAAGTTAA 2265 0.4243 MECRKFQIAILSAQGLENVREIFRMKVYAQLSIPGNPQIKRETPVDTEGETNPAWNSTIRFTIGNQAVEHQGVVFVIKLYCSRALGDRYIGEVSLSFKDLFDGAAPTSQGRSSGIVSYPVKKGGADSQGVLNFSYSFGDIVMVKKPSLFSTRNLAVAESAIRERKRNKEKLKQAGSTHVASTYSDVQSPGSAGERHQNANNVQPCMKELGPRTVEAERFNCHISPVIFYGSPHGVPPKRPSSLLRLLREIRVELSEQNKSDLREEVWATFPRQDESIKFAQGHADVHIFSYQDHLNGQRRFLVSTYKEFWQRYKNMDSKFRHHYEVIQEGFPCHLYFDLEFNKKDNAEKDGDEMVDLLISVVSEALLEKYSIQVNEKWIVELDSSTGEKFSRHLIIRIPKIAFKDNSHAGVFVAEICSQISSAGEGDGNFKKLFISKGSTSAEFPCQLFVDTAVYSRNRCFRLALSSKAGKNSVLLPTGRFKCKDMCEEEMFMASLICNIDVDCEKFLVCKMDLNCVKTLHFDMEENHNCRKHSSSPQDFALSACTSNVSGTCFMGNSPFPALDIFVESIASIGNVSGKIRSWYWFSEYRLMVYSMSRNRYCERIGRQHKSNHVIYVVDLRRAIFYQKCHDPDCRGYRSPSRPIPMDVIPNTAVLMDSVQTEHHVESTSNHLGYSLVENDQECVSLYNDKSITDSCKKDAWWLEAIRFADNVESVQHMRDLSDTENIDDEDDDWWMAAERTASQTEQTYFNHKS* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1006 754 ProSiteProfiles C2 domain profile. 1 111 IPR000008 -
Vvi16g1006 754 MobiDBLite consensus disorder prediction 166 198 - -
Vvi16g1006 754 Pfam Herpesviridae UL52/UL70 DNA primase 585 646 - -
Vvi16g1006 754 PANTHER DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN 158 717 IPR044917 GO:0003887|GO:0003896|GO:0042276
Vvi16g1006 754 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 140 IPR035892 -
Vvi16g1006 754 Gene3D C2 domain 5 138 IPR035892 -
Vvi16g1006 754 SMART C2_3c 5 109 IPR000008 -
Vvi16g1006 754 Coils Coil 154 174 - -
Vvi16g1006 754 Pfam C2 domain 5 105 IPR000008 -
Vvi16g1006 754 MobiDBLite consensus disorder prediction 174 198 - -
Vvi16g1006 754 CDD C2_SRC2_like 5 133 IPR044750 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1006 Vvi-Chr16 18302977 18312966 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1006 K22761 - vvi:100257712 1185.24