Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1004 ATGGAGTGCAGGAAGTTCCAGATTGCCATTCTTTCAGCTCAAGGTCTTCAGAACGTCCGAGAAATATTCAGAATGAAAGTCTACGCCCAGCTTTCAATCCCCGGCAATCCCCAAATAAAGAGAGAAACCCCAGTGGACACAGAGGGGGAGACCAACCCCGCATGGAACTCCACCATTAGATTCACAATAGGCAATCAGGCAGTCGAATACCAAGGCGTCGTGTTCGTCATCAAGCTATACTGCAGCCGGACCCTAGGAGACCGGTACATCGGTGAGGTGAGCCTATCTTTCAAGGACCTGTTTGATGGTGCCGCACCCACCAGCCAAGGCCGCAGCAGCGGTATTGTAAGTTACCCAGTGAAAAGGGGTGGAGCGGATTCACAAGGGGTATTGAACTTTTCATACTCTTTTGGGGATATAGTGATGGTTAAGAAACCATCCCTTTTCTCGACCAGAAATTTGGCAGCTGCAGGTATCTTTATTGTGAGAGTGGTTTTAGAGGCAACCTTAGGAGCAAGCATCGATCTCGACATTCCATTCTTTGGAGAAGATGTTCCGATATGTTAG 567 0.485 MECRKFQIAILSAQGLQNVREIFRMKVYAQLSIPGNPQIKRETPVDTEGETNPAWNSTIRFTIGNQAVEYQGVVFVIKLYCSRTLGDRYIGEVSLSFKDLFDGAAPTSQGRSSGIVSYPVKRGGADSQGVLNFSYSFGDIVMVKKPSLFSTRNLAAAGIFIVRVVLEATLGASIDLDIPFFGEDVPIC* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1004 188 Pfam C2 domain 5 105 IPR000008 -
Vvi16g1004 188 Gene3D C2 domain 5 138 IPR035892 -
Vvi16g1004 188 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 140 IPR035892 -
Vvi16g1004 188 PANTHER INGRESSION PROTEIN FIC1 4 144 - -
Vvi16g1004 188 CDD C2_SRC2_like 5 133 IPR044750 GO:0006952
Vvi16g1004 188 ProSiteProfiles C2 domain profile. 1 111 IPR000008 -
Vvi16g1004 188 SMART C2_3c 5 109 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1004 Vvi-Chr16 18269683 18270249 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1004 - - vvi:104882216 373.629