Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi16g1003 | ATGGAGTGCAGGAAGTTCCTGATTACCCTTCGTTCAGCTCAAGATCTTGTGGACGTCCGAGAAAGATTCAGAATGAAAGTTTACGCCCAGATTTCATTCGCTGGCGATTCCAGAACAAAGAGAAAAACCCCAGTGGACAAAAAAGGGAAGACCGACCCCGCATGGAACTTCACCACTGGATTCACAATAGGCAATGAGGCAATTGAATACCAAGGCGTCATGCTTGTCATCAAGCTATACTGCAGCCGGACCCTAGGAGACCGGTACGTCGGTGAAGTGAGAGTATCTTTCAAGGACCTGTTTGATGGTGCCGCGCCCACCAGCCAAGGCCGCAGAAGCGGTATTGTGAGTTACCCAGTGATGAGAGGTACAGCGGATTCACAGGGGCTGTTGAACTTTTCATACTCTTTCGGTGGTATAGTGATGGTTAAGAAACCATCTCATGTCTCGGCCAGATATTTGGCGGTTGCTGGTATCGTTATTGTGAGAGTGGTTTTAGAGGTTGCCCTAGGAACAAGCCTCAATCTCGAGATTCCATTCTTTGGAGAAGATGTTCCAATTGAACTATGTGAAAGTGTATGA | 582 | 0.4759 | MECRKFLITLRSAQDLVDVRERFRMKVYAQISFAGDSRTKRKTPVDKKGKTDPAWNFTTGFTIGNEAIEYQGVMLVIKLYCSRTLGDRYVGEVRVSFKDLFDGAAPTSQGRRSGIVSYPVMRGTADSQGLLNFSYSFGGIVMVKKPSHVSARYLAVAGIVIVRVVLEVALGTSLNLEIPFFGEDVPIELCESV* | 194 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi16g1003 | 193 | Gene3D | C2 domain | 2 | 111 | IPR035892 | - | |
| Vvi16g1003 | 193 | ProSiteProfiles | C2 domain profile. | 1 | 111 | IPR000008 | - | |
| Vvi16g1003 | 193 | SMART | C2_3c | 5 | 109 | IPR000008 | - | |
| Vvi16g1003 | 193 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 4 | 139 | IPR035892 | - | |
| Vvi16g1003 | 193 | PANTHER | INGRESSION PROTEIN FIC1 | 7 | 147 | - | - | |
| Vvi16g1003 | 193 | CDD | C2_SRC2_like | 8 | 133 | IPR044750 | GO:0006952 | |
| Vvi16g1003 | 193 | Pfam | C2 domain | 7 | 105 | IPR000008 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi16g1003 | Vvi-Chr16 | 18258722 | 18259303 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi16g1003 | - | - | vvi:104882217 | 382.489 |