Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1002 ATGTCTCACAATATTACTGAAAGCAGATACTCTTCACTTCAACAACTTGTCACACTTTTGGTAGAGAATGATACTTCATGGGAGTTGGAAGCCACAACAACAATGCCTTATTATAATAGTGCCCCAAATCTAGTGGAAAGGCAAAACTCCCAAGAAAGTTCAACTAGCGAGCCCAAAAAGAGTGATGAAATTCCATCATTTTTGGCAACAATATCAAACAATCCAGATATTGTCAAGGCAATACTTGCATTCCACCCTCATGCGCTCGAGAATACTAATAAGAAAGGAAGGAACATATTACATGAGGCAATCCTTTATCGTCAAATTGATATTTTTGATATAGTGTTAGAGTATGAAATGTTTGCGAAAAGGCTATTAACAGCTACGGATAATGAAGGGAACTCCTTACTACATATGGTTGGCAAAAAAAGAAAAAGTCAAGCTAGTGAAAAGATGCAAAGCCCTGCACTCCAACTGCGAAATGAGATGTTTTTGTTTGAGAAAGTGAAGTCAGCCTCTAGGATGCATTTCAGCAAGGCTCTCAACAGAATGAACCAGACTGCCGAAGAATTGTTTGCTGCTACTAATGATCAACTCCATCGGGAAGCAAAGGAATGGCTAATGCGCACCACGGAGAATTGCACCATTCTTTCTGTTTTCATAGCCACTGTTGCCTTCGCAGCAGCCTACACAATACCAGGAGGTCCTGATCAAAGCACTGGTATTCCAATCCTAAACTGTCAATCCTTCTTCGTGCTTTTCATTGTAGCCGATGTGATCTCCCTCACTTTGGCTTTAACATCTGTGGGTATATTTCTCTCAATCCTTACATCCTCATTTCCATTACGAGACTTCAAGGCATATCTCTTTAAGAAGCTGATACAGGGAATTATATGTCTGATCCTTTCTGTCTCAATGATGGCGGTGGCGTTTGGAGCAACAATCATCCTGATAATGGGACATAATTGGGAAAATGTTTTATGGCATGTGGTTGCATTCCTTCCGGTCCCCATTTTTTTTCTCTCATATTCACCTCTACGTTCAGCATTCTTGGGAACTTGCAGAGAACTGCTCAAAAAACTTGCTCTTCTTGTGCTTGTAATATTCCTTGCTCTCCCCATTTTTCTTCTTTGGGAAGCTGGCAAAGGACTGTTCAGGAATCTGGCATGGGGTTGTGCATCTATAGATAAATCTGTCCGTTGGATATCTCGGAATAGATCACAGCCCACATCCGATACCCATTCTCCTCAGCCAGCTGGAGGTCATCGTAGCGAAGTTTGA 1281 0.4145 MSHNITESRYSSLQQLVTLLVENDTSWELEATTTMPYYNSAPNLVERQNSQESSTSEPKKSDEIPSFLATISNNPDIVKAILAFHPHALENTNKKGRNILHEAILYRQIDIFDIVLEYEMFAKRLLTATDNEGNSLLHMVGKKRKSQASEKMQSPALQLRNEMFLFEKVKSASRMHFSKALNRMNQTAEELFAATNDQLHREAKEWLMRTTENCTILSVFIATVAFAAAYTIPGGPDQSTGIPILNCQSFFVLFIVADVISLTLALTSVGIFLSILTSSFPLRDFKAYLFKKLIQGIICLILSVSMMAVAFGATIILIMGHNWENVLWHVVAFLPVPIFFLSYSPLRSAFLGTCRELLKKLALLVLVIFLALPIFLLWEAGKGLFRNLAWGCASIDKSVRWISRNRSQPTSDTHSPQPAGGHRSEV* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1002 426 PANTHER CASKIN 28 346 - -
Vvi16g1002 426 MobiDBLite consensus disorder prediction 40 64 - -
Vvi16g1002 426 MobiDBLite consensus disorder prediction 40 55 - -
Vvi16g1002 426 Pfam Domain of unknown function 204 316 IPR026961 -
Vvi16g1002 426 Gene3D - 26 147 IPR036770 -
Vvi16g1002 426 SUPERFAMILY Ankyrin repeat 40 144 IPR036770 -
Vvi16g1002 426 MobiDBLite consensus disorder prediction 406 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1002 Vvi-Chr16 18253419 18256261 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1002 69 311 Miscellaneous Gene Families AT5G60070 26.014 5.19e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1002 - - vvi:100266905 486.108