Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1001 ATGGCTGACATCAATTATACAGCCCAAAGGGGACGCAACAGGGATTTGTGTAATGCTTTGATGGGCAAACAGGACAAGGAAGTGACCCGAGTTTGCCGTGATCTTCCTGAAGGCCCATTGCGGAGAATTGGTGCTAACAACGATACAGTCCTCCACATGGCTGCTCACTCCGAACAAAGTGATCTGGTACTCGAATTACTGAAACTTTTACCCGGAAATCGCAGCCATGGACTGGTAGATATAAAAAACAACGCCGGTGACACTATACTCCACGAAGTAGCCACCAGCGACAACATGATCGGGGTGGGGGAGAAGGTGTTGAAGAGAGATGAGGGGTTGCTCTTTGTGCAGAACGACTCGGGAGAGATGCCTATTTTTTGTGCAGCCCGCTATGGCCAAATTGTGATGTTTATGTTTCTGGCTGACAAAATGGAGCTGAAGAAACGAAGTTCAGAAGATGGTAAACGCCATTTGCAAAGGAATGATGGAACAACAGTTCTTCATATTTCCATCGTCACTGAGTGTTTTGAGTTAGCCCACTTAATTGCAGAGAGCTACCCATATTTAATTGAAGAAAGGGATCAAGACTCAATGACCGCTCTTCAATATCTTGCATGCAATCCAACCGTATTTGGAAGACAAAAAGTGAAAATGAGACGAGGGTTTGTCGAGGAGTTGATCAACTCTTGTATAGTACATTTGATTTCTTCTTCATTACCATTTATTCTTCTTTTACTCAATTACACTTACTTGCTTTTTTAG 762 0.4344 MADINYTAQRGRNRDLCNALMGKQDKEVTRVCRDLPEGPLRRIGANNDTVLHMAAHSEQSDLVLELLKLLPGNRSHGLVDIKNNAGDTILHEVATSDNMIGVGEKVLKRDEGLLFVQNDSGEMPIFCAARYGQIVMFMFLADKMELKKRSSEDGKRHLQRNDGTTVLHISIVTECFELAHLIAESYPYLIEERDQDSMTALQYLACNPTVFGRQKVKMRRGFVEELINSCIVHLISSSLPFILLLLNYTYLLF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1001 253 Gene3D - 5 100 IPR036770 -
Vvi16g1001 253 SUPERFAMILY Ankyrin repeat 41 205 IPR036770 -
Vvi16g1001 253 PANTHER NO MECHANORECEPTOR POTENTIAL C, ISOFORM D-RELATED 46 224 - -
Vvi16g1001 253 Gene3D - 101 233 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1001 Vvi-Chr16 18247257 18248671 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1001 - - vvi:100854509 273.863