Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1000 ATGGAAGGAGAAGATCTAAGGACCAAAAGCTCCGTTAAATGGCATTTGAAATTGCCCATTTGGGAAGAACTTGGAATTGAAAAGCACAGACATGCTTCAGCTTGGAAACTTGCCCAGGAGTTGATTAAAAATGATACTTCATGGGAGGTTACTGAAAATGCAGCACTTAATCAAGGTAAGCCTAATCAAGAGAAAAGCGATGGCTCGTCTGGGTCGTTGCTAAAAAGAGGAAGAGAAGGGCTCTGTATTGCCTCCCAACACCTAGAGGAAAAGAAAGGACAATGCTGCAACGAGGAAAAAACCAAAACTACCTTGACAGGGGTCAAGAGTGATGAAACTCCATTATTTCTGGCAACAAGTTGGAAAATTACAGAACTTGTGGAAGAAATACTAAAGAAATATCCTCAGGCAGTTGAGAATGTTAATAAAAAAGGAAGGAACATACTACATGTAGCCATTCAATACCGCCAAATGAAGATTTTTGATATGGTCACAAAGAATGATATGCTAGCAAGGAGGCTAGCACGAGCCACAGACGCGAAAGGGAACTCCTTACTGCATATGGTGGCCAAAAAAAGAAAAGGTCTTGTGCACGAAACTTCCCAAGGCCCTGCACTCGAATTGCAAAAGCAGATGATCCTTTTTGAGGTGCACTTTCACTATTTCATTTGTAAAATTTGCAGCTCACTCTTGCCTAAACCTTAA 705 0.4113 MEGEDLRTKSSVKWHLKLPIWEELGIEKHRHASAWKLAQELIKNDTSWEVTENAALNQGKPNQEKSDGSSGSLLKRGREGLCIASQHLEEKKGQCCNEEKTKTTLTGVKSDETPLFLATSWKITELVEEILKKYPQAVENVNKKGRNILHVAIQYRQMKIFDMVTKNDMLARRLARATDAKGNSLLHMVAKKRKGLVHETSQGPALELQKQMILFEVHFHYFICKICSSLLPKP* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1000 234 MobiDBLite consensus disorder prediction 54 70 - -
Vvi16g1000 234 MobiDBLite consensus disorder prediction 54 73 - -
Vvi16g1000 234 SUPERFAMILY Ankyrin repeat 110 191 IPR036770 -
Vvi16g1000 234 Gene3D - 35 216 IPR036770 -
Vvi16g1000 234 PANTHER CASKIN 29 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1000 Vvi-Chr16 18234631 18235601 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1000 77 191 Miscellaneous Gene Families AT3G09550 31.304 1.85e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1000 - - vvi:104882188 430.254