Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0999 ATGGCGGCCGTCACCGACTCCGAAAAAGAACGTGAACTCAACGCACGCCTGTTCCATGCCTTGATGGAAAATGATAAGGACGTCGTGATCGAACTCTGTAGGCAAGAAAGTACTTCTGATGGTCCATTACACGTAACAAGTATACACAAAGACACTGTTCTTCATCTGGCCTGTTACTCCAAGCAGCCTCATCTTGCAGAGGAATTAGTTCAACTGTTGCCCAATAATCCCAACCTGCGCCTCACCAAGCTTAAAAACGACGTCGGAAACACTGTACTCCACGAAGCAGCCACCAGCAACAGCCTGACCCAGGTGGCCACGGTAATGATAGCGAAACAACGTAAGTTGCTAACTAAGCGTAACATCCTCGGAGAGACGCCTCTTTTCCGGGCGGTCCGGTTTGGGAAAATTAAAATGTTCAAGCTTCTGGCGCACGAAGTTGATAAAGACAATCAGGAGGTTAGAAAAGAACAGCTCCAGAGTAAAGATGGAACGTCTATTCTTCATATTGCTGTCATTACTGAGCACTTTGGTGAGTTCCTCTGCTCATTTTTTCCAAGGCCTTCTTGTCCTCCTTCACTCTTTCACTCTATTAATCTCTTTCTATATATGTATATATTGAAGGAATTAGTAAAATCCGATTTCGTTAGGCTCTTCAACCATAAGAACCAGACTGCTGAGGAATTATTAGTTGATAACTATTCTAAACTTCATGAGGAATCCAAAGAATGGACAAAACGCACCTCTGAAAATTGCTCCATTGTGGGTGTTCTGATAGCTACTGTCGCATTTGCTGCAGCCTACACTGTACCTGGAGGTAATCAAAGCACTGGTATACCCAAGACTTCAAGCACTCTCTTATTCAAAAGCTGA 873 0.441 MAAVTDSEKERELNARLFHALMENDKDVVIELCRQESTSDGPLHVTSIHKDTVLHLACYSKQPHLAEELVQLLPNNPNLRLTKLKNDVGNTVLHEAATSNSLTQVATVMIAKQRKLLTKRNILGETPLFRAVRFGKIKMFKLLAHEVDKDNQEVRKEQLQSKDGTSILHIAVITEHFGEFLCSFFPRPSCPPSLFHSINLFLYMYILKELVKSDFVRLFNHKNQTAEELLVDNYSKLHEESKEWTKRTSENCSIVGVLIATVAFAAAYTVPGGNQSTGIPKTSSTLLFKS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0999 290 FunFam Uncharacterized protein 8 253 - -
Vvi16g0999 290 PANTHER CASKIN 160 288 - -
Vvi16g0999 290 Pfam Ankyrin repeats (3 copies) 54 150 IPR002110 GO:0005515
Vvi16g0999 290 Gene3D - 8 253 IPR036770 -
Vvi16g0999 290 SMART ANK_2a 12 41 IPR002110 GO:0005515
Vvi16g0999 290 SMART ANK_2a 49 79 IPR002110 GO:0005515
Vvi16g0999 290 SMART ANK_2a 123 154 IPR002110 GO:0005515
Vvi16g0999 290 Pfam Domain of unknown function 242 282 IPR026961 -
Vvi16g0999 290 SUPERFAMILY Ankyrin repeat 17 180 IPR036770 -
Vvi16g0999 290 Coils Coil 142 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0999 Vvi-Chr16 18221979 18224792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0999 52 272 Miscellaneous Gene Families AT5G60070 27.706 4.35e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0999 - - vvi:100242184 348.591