Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0996 ATGGCCCCTCGCTTCGAGCTCAAGCTCAAGATCTCCTCCGCCAAAGATCTGAAGAACGTGAACTGGTGCCACGGCTCTCTGAAGCCATACGCCGTGGTTTGGGTGGAACCTAACGCTAAGTGCTCCACCAAAGTCGACCATGACGGCGACACCTTTCCTTCCTGGAACGAGACTCTCCACATTCCAGTGCCCTCCTCCATCGATGATTCCGCCCTCTACCTCGACATCGTCCACGTCAAATCCGATGACGAAGACGACACCAAGCCTATGGTAGGCTCCGCTCGCCTCTTCCTCCGCGACGTCGTCGACGACGTCGGCTTCGGCGTCGAGGCCTTCCGCACTCTCGAGCTCCGCCGTCCCTCCGGGCGCCCTCAGGGCAAGGTCGATGTCGAGGTCTCCGTGAGGGATTTGCGTCACCGTGCGCCGGAGCCCTACTACACAGCACCTTACGGCGTGCCGCCGCCGCCGGGAACCAGAGGAGCAGCCTACGCCGATCCGCCGGCCTACGGCGCACCTCCACCTGATCCTTACTACTCCAATGCCGCCCCCTACGGCCACTCCCCGTACGGGCAGCCGGCGTATGGGTATCAGGAACCAACTTACGGATACGGTCAAGGGTCGTACGGGCAGACAGTGGTGGTGGAGGAGAAGAAGAAGAAGTCTGGCATGGGGATGGGGACGGGATTGGCTGTGGGTGCGGTCGCCGGAGTATTGGGCGGACTAGCAATAGCTGAGGGCGTGGATGCTTTGGAGGACAACATCGCTGAAGACGTGGAAGAGAGGATTGAAGATGAGGAAGAGGACTGA 807 0.6097 MAPRFELKLKISSAKDLKNVNWCHGSLKPYAVVWVEPNAKCSTKVDHDGDTFPSWNETLHIPVPSSIDDSALYLDIVHVKSDDEDDTKPMVGSARLFLRDVVDDVGFGVEAFRTLELRRPSGRPQGKVDVEVSVRDLRHRAPEPYYTAPYGVPPPPGTRGAAYADPPAYGAPPPDPYYSNAAPYGHSPYGQPAYGYQEPTYGYGQGSYGQTVVVEEKKKKSGMGMGTGLAVGAVAGVLGGLAIAEGVDALEDNIAEDVEERIEDEEED* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0996 268 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
Vvi16g0996 268 PANTHER INGRESSION PROTEIN FIC1 7 235 - -
Vvi16g0996 268 Pfam C2 domain 7 100 IPR000008 -
Vvi16g0996 268 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 138 IPR035892 -
Vvi16g0996 268 CDD C2_SRC2_like 6 130 IPR044750 GO:0006952
Vvi16g0996 268 Gene3D C2 domain 2 141 IPR035892 -
Vvi16g0996 268 SMART C2_3c 6 110 IPR000008 -
Vvi16g0996 268 Coils Coil 247 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0996 Vvi-Chr16 18165899 18166705 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0996 - - vvi:100242355 457.988