Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0995 ATGGCAGCGAGCGATGTGCCATGTTGTGAGACAATGTTCTGGATATATCTGGTTATATGCGTAGCTCTTGTGTCTTTTGCTGGTCTAATGTCAGGCCTCACTCTGGGACTCATGTCCCTCAGCCTTGTTGATCTAGAGGTCCTGGCCAAGGCTGGTCGGCCCCAAGATAGGAGGAATGCAGAGAAGATCCTGCCCATTGTTAAGAACCAGCACTTGCTCCTGTGTACCCTCCTCATAGGCAATTCTCTGGCAATGGAGGCCCTGCCCATTTTCCTTGATGCGCTTGTCCCAGCTTGGGGTGCTATATTGATATCAGTCACCCTCATACTTGCTTTTGGGGAGATCATCCCTCAAGCTGTCTGCTCCCAGTATGGTCTGAGCGTCGGTGCAAAACTGTCTGTTGTGGTTCGGTTACTTGTTTTAGTCCTCTTCCCTATATCTTACCCTATCAGTAAGCTCCTGGATTGGCTCCTTGGAAAGGGCCATTCTGCGCTGTTACGGCGAGCAGAGCTAAAGACCTTGGTGGATATGCATGGAAACGAGGCAGGGAGAGGTGGGGAGTTGACACATGATGAAACAACCATTATCTCTGGAGTTTTGGACATGACACAGAAGACAGCTAAAGATGCAATGACACCCATATCTGAAATATTTTCCCTTGACATAAACACTAGACTCGACGAGGATACAATGAGCCTAATACTTAACAGAGGGCATAGTCGAATACCCGTCTTCTCAGGAAGCCTGACAAATATAATCGGCCTTATTTTGGTGAAAAATCTGATCAAATGTCGTGCAGAAGATGAAACCCCAATCAGGAATCTTACTATTAGAAGAATCCCCAGGGTATATGATTGTTTACCACTGTATGATATACTAAATCAATTCCAGAAGGGTCACAGTCATATGGCTGTTGTTGTGAAGTGTAGGAAGGATGTCAAGACAAATACAGAAAATGCAAACACCAAACCCTGCACATTTGCGATAAATAACTCGAATTCGAGGCAAAGACAAGCCAAGAATAAAGGAGTTGACAATCAGTTTTGTCCAAGTGTACAGCTGAATATCTCTAGAAATGTGTCCTCTGAATCTAAAAATCCGACGTTAAAGAAAATGATGGAGCAAGGCAAAGGTGCGAGTCCACGGTTAAAAAAATGGGGAAGTGGAGATGGAAATGTTACAGATGAAGACTTGGAATCTCTTCCAAATTTGGATGAAGAGGTCATTGGTATCATAACAATGGAGGATGTCATGGAAGAACTGCTGCAGGAGGAGATATTGGATGAGACAGATGAGTACATCGATGTTCACAACAAGATCAAAATCAATATGCTTCCATCAAGAAGATCATCATCAAGATCTCCTGCAGTGGCACTGGCCTCTCACCTTCACTGGCGATCGCCAGTGGCATCTCCGCTTTCTTCATGTGGTCATACTCCAGTACTAGACTCACCAGTCTCCCCCTATGTTTATCCATCCTTTATAAGACCCACTCTCTCTGCTTCACCTGGGATTTCTATGCCAAATTCTCCAGCTGGTCTTGCAGGCCCTATTCGCAGCTCACCATCCCCACATCGGGTTTCAAGAAAATCATACGAGAAGATAAGGCAACCAGGTGGTTAA 1623 0.4516 MAASDVPCCETMFWIYLVICVALVSFAGLMSGLTLGLMSLSLVDLEVLAKAGRPQDRRNAEKILPIVKNQHLLLCTLLIGNSLAMEALPIFLDALVPAWGAILISVTLILAFGEIIPQAVCSQYGLSVGAKLSVVVRLLVLVLFPISYPISKLLDWLLGKGHSALLRRAELKTLVDMHGNEAGRGGELTHDETTIISGVLDMTQKTAKDAMTPISEIFSLDINTRLDEDTMSLILNRGHSRIPVFSGSLTNIIGLILVKNLIKCRAEDETPIRNLTIRRIPRVYDCLPLYDILNQFQKGHSHMAVVVKCRKDVKTNTENANTKPCTFAINNSNSRQRQAKNKGVDNQFCPSVQLNISRNVSSESKNPTLKKMMEQGKGASPRLKKWGSGDGNVTDEDLESLPNLDEEVIGIITMEDVMEELLQEEILDETDEYIDVHNKIKINMLPSRRSSSRSPAVALASHLHWRSPVASPLSSCGHTPVLDSPVSPYVYPSFIRPTLSASPGISMPNSPAGLAGPIRSSPSPHRVSRKSYEKIRQPGG* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0995 540 ProSiteProfiles CNNM transmembrane domain profile. 9 192 IPR002550 -
Vvi16g0995 540 CDD CBS_pair_CorC_HlyC_assoc 206 307 IPR044751 -
Vvi16g0995 540 MobiDBLite consensus disorder prediction 374 398 - -
Vvi16g0995 540 PANTHER METAL TRANSPORTER CNNM 2 462 IPR045095 GO:0010960
Vvi16g0995 540 SUPERFAMILY CBS-domain pair 196 423 IPR046342 -
Vvi16g0995 540 MobiDBLite consensus disorder prediction 505 540 - -
Vvi16g0995 540 Pfam Cyclin M transmembrane N-terminal domain 19 191 IPR002550 -
Vvi16g0995 540 ProSiteProfiles CBS domain profile. 211 272 IPR000644 -
Vvi16g0995 540 FunFam DUF21 domain-containing protein 190 324 - -
Vvi16g0995 540 Gene3D - 360 429 IPR046342 -
Vvi16g0995 540 Gene3D - 190 324 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0995 Vvi-Chr16 18150126 18152952 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0995 K16302 - vvi:100256110 1039.25