Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0992 ATGTCGGGATGTCAACTTAAAACAATCTTGAAGGTGGAGTTATTCGATGACAAAAGCAAGCAGAAGGCCATGAAGAATGTCGCTTGCCTTCCAGGAGTTTCTTCAGTTTCCATGGATATGAAGGACAAGAAATTGACTGTAATTGGAGATGTGGATCCAGTAAGCATAGTGGGCAGGTTGAGGAAGCTTTGCCACCCAGAGATATTATCAGTTGGCCCAGCAAAAGAGCCAGAGAAGAAGAAGGAGGAACCCAAGAAAAAAGAGGACCCTAAAGATCAATGGGCTGATCTTGTTAAAGCATACCAAGCTTATAATCCTCACTATACCACACACTATTTTGTTAGAAGTGCGGAAGAAGACCCGAATGCTTGTGTCATTTGTTAA 384 0.4245 MSGCQLKTILKVELFDDKSKQKAMKNVACLPGVSSVSMDMKDKKLTVIGDVDPVSIVGRLRKLCHPEILSVGPAKEPEKKKEEPKKKEDPKDQWADLVKAYQAYNPHYTTHYFVRSAEEDPNACVIC* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0992 127 MobiDBLite consensus disorder prediction 71 92 - -
Vvi16g0992 127 Gene3D - 3 76 - -
Vvi16g0992 127 ProSiteProfiles Heavy-metal-associated domain profile. 5 72 IPR006121 GO:0046872
Vvi16g0992 127 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 7 124 - -
Vvi16g0992 127 SUPERFAMILY HMA, heavy metal-associated domain 7 65 IPR036163 GO:0046872
Vvi16g0992 127 MobiDBLite consensus disorder prediction 72 92 - -
Vvi16g0992 127 Pfam Heavy-metal-associated domain 12 62 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0992 Vvi-Chr16 18120458 18125792 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0992 - - vvi:100252599 229.565