Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0984 ATGGCGGATGTGCAGATGGGAGAGGCCGAAACCTTCGCCTTCCAGGCTGAGATCAATCAGCTTCTGAGTCTCATCATCAACACTTTCTACAGCAACAAGGAGATCTTCCTTCGTGAGCTCATCAGCAACGCCTCTGATGCCTTGGATAAGATTCGATTCGAGAGCCTGACGGACAAGAGCAAATTGGATGCGCAGCCCGAGCTGTTCATCAGGATTGTACCCGACAAAGTTAACAAGACCCTCTCTATTATTGACAGTGGCATCGGAATGACCAAAGCAGATCTGGTGAACAATTTGGGAACAATTGCGAGGTCTGGAACCAAGGAGTTCATGGAGGCGTTGCAGGCTGGAGCAGATGTGAGCATGATAGGCCAATTCGGTGTAGGGTTTTACTCAGCCTACCTAGTTGCAGAGAAGGTCATTGTGACAACAAAGCACAATGACGATGAGCAATACATCTGGGAGTCTCAAGCTGGTGGGTCATTCACTGTTACCAGGGACGTTTCTGGAGAGCCGCTTGGGAGAGGAACCAAGATCACCCTCTTCCTCAAGGACGACCAGGTGGAGTACTTGGAAGAAAGGCGAATCAAAGACCTTGTGAAGAAGCATTCTGAGTTCATTAGCTACCCAATCTATCTCTGGACTGAGAAGACAACTGAGAAAGAGATCAGTGATGATGAGGATGATGAGCCCAAGAAGGATGAGGAAGGAGCTGTTGAGGAAGTTGATGAGGAGAAAGAGACCAAATCAAAGAAGAAGAAGATCAAGGAGGTTTCCCATGAGTGGCAGCTCATCAACAAGCAGAAGCCCATCTGGCTGCGCAAGCCAGAGGAGATCACCAAGGAGGAGTATGCCTCATTCTACAAGAGCCTGACCAATGACTGGGAGGACTATCTTGCTGTTAAGCACTTCTCGGTAGAGGGACAGCTCGAGTTCAAAGCTATCCTCTTTGTCCCAAAGAGAGCCCCATTTGATCTGTTCGACACCCGGAAGAAGATGAACAACATCAAGCTTTATGTGAGGAGGGTGTTCATTATGGACAATTGCGAGGAGCTCATTCCAGAGTACCTCGGATTTGTGAAAGGCGTTGTTGATTCTGATGACTTGCCACTCAACATATCTCGTGAGATGCTTCAACAAAACAAGATTCTGAAGGTGATCAGGAAGAATTTGGTGAAGAAATGCATTGAGATGTTCAATGAGATTGCGGAGAACAAGGATGATTACAGCAAGTTCTATGATGCTTTCTCCAAGAACTTGAAGTTGGGTATTCATGAAGACAGCCAGAACAGAGCTAAACTGGCTGATCTGCTCCGATATTACTCGACCAAAAGTGGTGAAGAGATGACAAGTTTGAAGGACTATGTCACCAGGATGAAGGAGGGCCAGAAGGACATCTACTACATCACTGGTGAGAGCAAGAAGGCAGTGGAGAACTCTCCATTCTTGGAGAGGCTAAAGAAGAAAGGATACGAAGTGCTCTTCATGGTTGATGCCATTGATGAGTATGCCGTCGGACAATTGAAAGAATATGATGGGAAGAAGTTGGTTTCTGCAACAAAGGAAGGCTTGAAGCTTGATGAAGAGAGTGAGGAAGAGAAGAAGAAGAGAGAGGAGAAGAAGAAGTCTTTCGAGAACCTCTGCAAGACCATCAAGGACATTTTGGGAGACAAGGTTGAGAAGGTGGTGGTCTCTGATAGAATTGTGGACTCCCCATGTTGCTTAGTGACTGGGGAGTATGGATGGACTGCAAACATGGAGAGGATCATGAAGGCTCAGGCATTGAGGGACAGTAGCATGGGTGCTTACATGTCAAGCAAGAAGACCATGGAGATCAACCCAGACAATGGGATCATGGAGGAGCTGAGGAAGAGGGCTGAGGTTGACAAGAACGATAAATCAGTGAAGGACCTTGTGATGCTCCTATATGAGACCGCCCTCCTGACTTCTGGGTTCAGTCTAGATGATCCAAACACATTTGCAGGTAGAATCCACAGGATGTTGAAGTTGGGTCTGAGCATTGATGAGGGGGAAGAGGTTGGTGAGGAGGATGCTGACATGCCTCCTTTGGAGGAGGATGGCAATGAGGAGAGCAAGATGGAGGAAGTGGACTGA 2115 0.4738 MADVQMGEAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSKLDAQPELFIRIVPDKVNKTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKITLFLKDDQVEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKDEEGAVEEVDEEKETKSKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDYLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKDDYSKFYDAFSKNLKLGIHEDSQNRAKLADLLRYYSTKSGEEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLDEESEEEKKKREEKKKSFENLCKTIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMGAYMSSKKTMEINPDNGIMEELRKRAEVDKNDKSVKDLVMLLYETALLTSGFSLDDPNTFAGRIHRMLKLGLSIDEGEEVGEEDADMPPLEEDGNEESKMEEVD* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0984 704 PRINTS 90kDa heat shock protein signature 193 211 IPR020575 -
Vvi16g0984 704 PRINTS 90kDa heat shock protein signature 80 97 IPR020575 -
Vvi16g0984 704 PRINTS 90kDa heat shock protein signature 98 115 IPR020575 -
Vvi16g0984 704 PRINTS 90kDa heat shock protein signature 10 30 IPR020575 -
Vvi16g0984 704 PRINTS 90kDa heat shock protein signature 123 145 IPR020575 -
Vvi16g0984 704 PRINTS 90kDa heat shock protein signature 31 53 IPR020575 -
Vvi16g0984 704 PRINTS 90kDa heat shock protein signature 175 192 IPR020575 -
Vvi16g0984 704 CDD HATPase_Hsp90-like 19 207 IPR020575 -
Vvi16g0984 704 FunFam Heat shock protein 90 alpha 522 673 - -
Vvi16g0984 704 Gene3D - 522 673 IPR037196 -
Vvi16g0984 704 SMART HKATPase_4 32 187 IPR003594 -
Vvi16g0984 704 PIRSF HSP90_HTPG 1 704 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi16g0984 704 Hamap Chaperone protein HtpG [htpG]. 7 669 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi16g0984 704 MobiDBLite consensus disorder prediction 677 704 - -
Vvi16g0984 704 FunFam Heat shock cognate protein 7 233 - -
Vvi16g0984 704 SUPERFAMILY Ribosomal protein S5 domain 2-like 267 522 IPR020568 -
Vvi16g0984 704 FunFam Heat shock protein 90 alpha 435 521 - -
Vvi16g0984 704 MobiDBLite consensus disorder prediction 676 704 - -
Vvi16g0984 704 MobiDBLite consensus disorder prediction 220 250 - -
Vvi16g0984 704 Pfam Hsp90 protein 189 696 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi16g0984 704 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 10 218 IPR036890 -
Vvi16g0984 704 Gene3D - 266 434 - -
Vvi16g0984 704 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 186 IPR003594 -
Vvi16g0984 704 ProSitePatterns Heat shock hsp90 proteins family signature. 30 39 IPR019805 GO:0005524|GO:0006457|GO:0051082
Vvi16g0984 704 FunFam Heat shock protein 90 alpha 266 434 - -
Vvi16g0984 704 SUPERFAMILY HSP90 C-terminal domain 546 668 IPR037196 -
Vvi16g0984 704 Gene3D - 435 521 - -
Vvi16g0984 704 Coils Coil 521 541 - -
Vvi16g0984 704 MobiDBLite consensus disorder prediction 222 242 - -
Vvi16g0984 704 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 10 701 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi16g0984 704 Gene3D - 8 233 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0984 Vvi-Chr16 18054237 18057038 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0984 K04079 - vvi:100257736 1277.31