Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0981 ATGGCGTCTGTGGAGTATCCAGCAATAAATTGCCGAAACCACAGTGCAGTGGATGAATCAGACTACCCCATTGTTAAAGCACTGCCTTCATATGGGGGCACTGCTGGAAGATTCAGCAGCCTCATTCTTGGAACAAACCTAACTGATGTAGTAATAACAGGCGGTAATGGCACGACAAATGGTCAGGGCGATTACGGGCCACCTCCAGCTCCTGGTCATGAAGGTCCTGTTATTGAAGGGATCAATTACAGAGACATGGTGGCTGATAATGTCACCTACCCTGCACAACTTCATGGAATTTCAGGCGGCCCTTTTACTGGATTTTGCATATCTAATGTCACTATTGGCTTGACTGAAGAATCAAGGAAACAGCAATGGGACTGTGATGAAGTTCAGGGTATAACAAGCAGAGTGACTCCCCAGCCATGTGATCTTCTGTCTCCCTCGAAGGAGATCTTGAATTGTCCTTTCCCCAAAGATCTGCTGCCCATTGAAGATGTTAAGTTGAGGATCTGTTCCTACTGTGAAACTACATCTGGAATGGTAGCTAGGACCATACATTAA 564 0.4592 MASVEYPAINCRNHSAVDESDYPIVKALPSYGGTAGRFSSLILGTNLTDVVITGGNGTTNGQGDYGPPPAPGHEGPVIEGINYRDMVADNVTYPAQLHGISGGPFTGFCISNVTIGLTEESRKQQWDCDEVQGITSRVTPQPCDLLSPSKEILNCPFPKDLLPIEDVKLRICSYCETTSGMVARTIH* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0981 187 SUPERFAMILY Pectin lyase-like 63 172 IPR011050 -
Vvi16g0981 187 PANTHER PECTIN LYASE-RELATED 16 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0981 Vvi-Chr16 18039832 18041713 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0981 18 65 Glycoside Hydrolase AT3G48950 67.925 2.65e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0981 - - vri:117933363 240.736