Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0980 ATGGAGTTCTGCCTGAATTCGAGAAAACCCCATGCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGAGTGGCAGAATGCCAAACATCCAGTTTTATGGAGCCGATTAAGTATAAGGCATTGAGGTGCCGGAAACACAGTGCGGTGCTGACGGACTTCGGAGCAACAGGGGATGGGAAAACGATAAACACCAAGGCCTTCAAATCCGCCATTGACCATCTCAGTCAGTTTGCAGATGATGGTGGAGCAGAACTCATTGTGCCTCCTGGAAAGTGGCTGACTGGGAGCTTCAATCTCACCAGCCATTTCACTCTTTATATCGATAAGGATGCTGTTATTCTTGGAGCCCAGGATGAATCGGCATACCCCCTTATTGAAGTTTTGCCATCATATGGAGTGGGAAGAGATGGAGGTGGAAGGCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAGGTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCCGTGCCAAAAAGTACAATGACACACGGCCCTACTTGATTGAAATCATGTATTCAAATCATGTTCAGATATCAAACCTTACATTGATCGATTCTCCATCATGGAATGTTCATCCTGTTTATAGCAGAAATGTACTTGTTAAAGATCTGACGATCTTAGCACCCATCGATTCTCCTAATACAGATGGAATCAACCCAGATTCATGCAAAAAAGTCAGGATTGAAGACTGCTTTATAGTCTCAGGAGATGACTGCATTGCAGTTAAGAGTGGATGGGATCAGTATGGATATAAATTTGGGATGCCTACAAAGGACCTACTCATCAGACGGCTGACCTGCATATCCCCTGACAGTGCCACCATAGCTTTAGGCAGCGAAATGTCGGGTGGGATCAAGAATGTCTGGGCTGAAGACATAACAGCCATAGACACCCAGTCGGGAATCAGGATCAAAACTGGGATAGGAAGGGGAGGCTATGTGAAAGACATATATGTTAGAAGAATGACAGTGAAGACCATGAAGTATGTCTTCTGGATTACAGGCGATTATGGATCACATCCAGATGATGGTTGGGATCCTAAAGCTCTGCCTGTCATTAAAAATATCAATTACAGAGATATGGTGGCTGAGAATGTGACATATTCTGCCAGACTTGATGGAATTTCCGGCGATCCTTTCACAGGAATCTGCATATCTAATGTGACTATTGGGTTGACTGAGAAACCAAAAGAACTGCAATGGAACTGCACTAATGTTGCAGGAGTTACCAGCCAAGTGACTCCTAGGTCATGTGACCTGTTGCCTCCTTCAGATAAGGAGGAATCGGACTATCCCCACATTCCACCATTGCCATCATATGGAAAAGGAAGAGATGGTGGTGGAAGGTTTTCTAGTCTCATTTTTGGAACAAATCTCACCGACGTTGTAATTATAGGTGGTAATGGCACGATAAATGGCCAGGGCAGAGTGTGGTGGGACAAATTTAAACAGAAAAAATTGGTAGATACCCGGCCTTACTTGATAGAGATAATGTTCTCTGATCAGGTCCAGATATCGAACCTTACATTGATCGACTCCCCATCATGGAATGTCCACCCCGTCTACTGCAGTGATGTAATAATTCAAGGGATGACGATTCTTGCACCAGTAGATGTTCCTAATACAGATGGAATAAACCCAGATTCATGCGCAAACGTGAAAATCGAGGACTGTTACATAGTCTCAGGCGATGACTGCATTGCAGTAAAGAGTGGCTGGGACCAGTACGGGATCAAATATGGAGCGTGGGAAGGGGAGGCTATTGGTCGCGGAGAATGGGGAGGAAGTGAGGAGTATCGGGCAATAAACTGCCGGAAACACAGTGCGGTGCTGACGGACTTCGGAGCAAAAGGGGATGGGAAAACGATGAACACCAAGGCCTTCAAATCCGCCATTGCAAATCTCAGTCAGGTTGCAGGTGATGGAGGCGCACAGCTGATTGTGCCTCCTGGGAAGTGGCTGACTGGGAGCTTTAATCTCACAAGCCATTTCACTCTTTTTGTCCACAAGGATGCTGTTATTCTTGGCGCTCAGGATGAAGCAGCATACCCCCTTATTGAAATATTGCCATCATATGGAGCAGGAAGAGATGGAGGTGGAAGGCATGCCAGTCTCATTTTTGGAACAAATCTCACTGATGTCGTAATCACAGGTGGGAATGGCACCATCCATGGTCAGGGTCAATACTGGTGGGACAAGTTTCGAGCCGATAAATTGAAAGACACCAGACCCTACTTGATAGAGATCATGTACTCTGATCAGGTCCAGATTTCTAACCTTATTTTGATCGACTCTCCATCATGGAATGTTCATCCCACTTACAGCAGCAATGTGATAATTCAATGGCTCACAATCATTGCACCAGTGGGTTCTCCTAATACAGATGGAATAAACCCAGATTCAAGCAAAAACGTTCTAATTGAAGACTGCTTCATAGTCTCCGGGGATGACTGCATTGCAGTAAAGAGTGGCTGGGACCAGTATGGGATTAAGTTTGGAATGCCAACCGAGGATCTAATCATCAGAAGGCTCACCTGCATATCCCCTGACAGTGCCGTCATTGCTCTGGGCAGCGAGATGTCAGGTGGGATCAAGAATGTCCGAGCTGAAAACATTACAGCCATAGATTCTGAGTCTGGTGTGAGGATCAAATCAGGTGTGGGAAGGGGAGGATATGTGAAAGATATCTATGCCAGAGGAATGACCATGAAGACCATGAAGTATGTCTTCTGGATGACAGGCGATTATGGACAACATCCAGACGATGGTTGGGATCCTAAAGCACTTCCTAAGATTGAAAATATCAATTACAGAGACATGGTGGCTGAGAATGTGACCTATTCTGCAAGACTTGACGGAATTTCGGGCGATCCCTTCACTGGAATTTGCATATCAAATGTGAAAATTGGACTGACTGAAAAACCAAAGAAACTGCAATGGAACTGCACTAATGTTGAGGGAGTTTCAAGCCAAGTGACTCCTCCTTCATGTGATCTGCTGCACCCCTCTAAGAAGGTTTTCAATTGTCCGTTCCCAGAAGATAAGCTTCCCATTGAAGATGTTCAGATGAAGATTTGTTCAACCTAA 3156 0.4512 MEFCLNSRKPHALGIVLAVLILGLLSFRVAECQTSSFMEPIKYKALRCRKHSAVLTDFGATGDGKTINTKAFKSAIDHLSQFADDGGAELIVPPGKWLTGSFNLTSHFTLYIDKDAVILGAQDESAYPLIEVLPSYGVGRDGGGRHSSLIFGTNLTDVVITGGNGTLNGQGKYWWDKFRAKKYNDTRPYLIEIMYSNHVQISNLTLIDSPSWNVHPVYSRNVLVKDLTILAPIDSPNTDGINPDSCKKVRIEDCFIVSGDDCIAVKSGWDQYGYKFGMPTKDLLIRRLTCISPDSATIALGSEMSGGIKNVWAEDITAIDTQSGIRIKTGIGRGGYVKDIYVRRMTVKTMKYVFWITGDYGSHPDDGWDPKALPVIKNINYRDMVAENVTYSARLDGISGDPFTGICISNVTIGLTEKPKELQWNCTNVAGVTSQVTPRSCDLLPPSDKEESDYPHIPPLPSYGKGRDGGGRFSSLIFGTNLTDVVIIGGNGTINGQGRVWWDKFKQKKLVDTRPYLIEIMFSDQVQISNLTLIDSPSWNVHPVYCSDVIIQGMTILAPVDVPNTDGINPDSCANVKIEDCYIVSGDDCIAVKSGWDQYGIKYGAWEGEAIGRGEWGGSEEYRAINCRKHSAVLTDFGAKGDGKTMNTKAFKSAIANLSQVAGDGGAQLIVPPGKWLTGSFNLTSHFTLFVHKDAVILGAQDEAAYPLIEILPSYGAGRDGGGRHASLIFGTNLTDVVITGGNGTIHGQGQYWWDKFRADKLKDTRPYLIEIMYSDQVQISNLILIDSPSWNVHPTYSSNVIIQWLTIIAPVGSPNTDGINPDSSKNVLIEDCFIVSGDDCIAVKSGWDQYGIKFGMPTEDLIIRRLTCISPDSAVIALGSEMSGGIKNVRAENITAIDSESGVRIKSGVGRGGYVKDIYARGMTMKTMKYVFWMTGDYGQHPDDGWDPKALPKIENINYRDMVAENVTYSARLDGISGDPFTGICISNVKIGLTEKPKKLQWNCTNVEGVSSQVTPPSCDLLHPSKKVFNCPFPEDKLPIEDVQMKICST* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0980 1051 Gene3D - 30 441 IPR012334 -
Vvi16g0980 1051 Gene3D - 616 1017 IPR012334 -
Vvi16g0980 1051 SUPERFAMILY Pectin lyase-like 627 1044 IPR011050 -
Vvi16g0980 1051 SMART pbh1 308 329 IPR006626 -
Vvi16g0980 1051 SMART pbh1 573 594 IPR006626 -
Vvi16g0980 1051 SMART pbh1 825 846 IPR006626 -
Vvi16g0980 1051 SMART pbh1 246 267 IPR006626 -
Vvi16g0980 1051 SMART pbh1 219 245 IPR006626 -
Vvi16g0980 1051 SMART pbh1 546 572 IPR006626 -
Vvi16g0980 1051 SMART pbh1 887 908 IPR006626 -
Vvi16g0980 1051 SMART pbh1 798 824 IPR006626 -
Vvi16g0980 1051 SUPERFAMILY Pectin lyase-like 40 444 IPR011050 -
Vvi16g0980 1051 Pfam Glycosyl hydrolases family 28 147 430 IPR000743 GO:0004650|GO:0005975
Vvi16g0980 1051 Pfam Glycosyl hydrolases family 28 479 597 IPR000743 GO:0004650|GO:0005975
Vvi16g0980 1051 Pfam Glycosyl hydrolases family 28 726 1009 IPR000743 GO:0004650|GO:0005975
Vvi16g0980 1051 SUPERFAMILY Pectin lyase-like 474 605 IPR011050 -
Vvi16g0980 1051 Gene3D - 443 608 IPR012334 -
Vvi16g0980 1051 PANTHER PECTIN LYASE-RELATED 20 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0980 Vvi-Chr16 18026694 18039329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0980 447 604 Glycoside Hydrolase AT3G48950 75.000 1.55e-77 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0980 - - vvi:100262858 907.131