Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0977 ATGGAGTTCTCTGCAATTTCCCCGTCCAATTCACTTCATTTTCCCACGAATTTTCTCGGGAAAATTATGACCCATTTTATGGTACGTCCCAGAAATGCTACTTTCTCCTGCAGGACCCTCCAAATTCAAACACTCGCCTCGAACTTGGAAGAGAGCAGTAGAGTATCATTTTCAACGAGATCGCGTGCGGACATAAAAAATGAAGAATCTTTCGTGTTGGGCAATCGAAAAGGTTGGATTCACTTTGTGGGTATTGGAGGTAGTGGGTTGTCAGCTCTCGCTATGCTCGCTCTTAAACAAGGGTTTGAGGTTAGTGGCTCGGATATTGTGTGGAGCAGCTTCTTGGATGGACTGAAAGAGACTGGGGCACAATTGCATTTAGGTCATTCAGAGTCAAACATACAGAGGAACAACGGGTCCAGCTTACCTGATGCAATTGTTGTTTCAAGTGCTATTCCCCAAGATAATCTAGAGATTTTACATGCCAAGTCTGTTGGAATACCAGTATATAAGAGAGGTAATTGGTTGGGAAAGCTCACAGAGCACTACAATCTCATTGCTGTTAGCGGTACTCATGGGAAGAGTACAACAGCAAGTATGCTTGCTTATGTTTTAAAATCAATGGGAGATGATCTTACAGCCGTAGTTGGGGCACAAGTGCCACAGTTTGGAGGAGGAAATATTATGTCAGGAAGTGGTCGCAATTTTGTTTTGGAGGCTGATGAATATGACTGTTGCTTCCTGGGATTACTGCCTTACATAGCTGTGGTTACAAATGTTGATTGGGAGCATGTTGATATCTTTCCAGATGAGGAAGCAGTCAAAGCTATTTTTAGGAGGTTCCTGAAACAAATCAGGGTTGGTGGACATCTCATTTTATGTGGGGATAGTGCAGGTGCATGCTCATTGCTGGATGACACAGAAGAATCAACTGTAGCAGACCATTCAAGTGGGAAGTTGTCAACTCTGAATTCAGATAAATGCAGTGATGGCTACAGAATAACAACTTTTGGAATTTCAAGAACTAATGAATGGCATGCATTATCGATTCGTCCTAACTCACAAGGTGGTAGTGATTTTGTACTGTGTCACAGGGGTTATCCAGTGGCAAACATCACCCTACAGATACCCGGAGTTCATAATGTTCTCAATTCATTAGCAGTTATTGCCACAGTGATGGCACTGGTTAGTGATGGAAGACAAAGTTATGAATCAATCAATTGTGTGAAGATACACTTGAACAATTTTGTTGGTGTTTCTAGACGTTTTGAGCTGATAGGTACTGTATGTGGATGCCTCATATATGACGACTATGCTCACCATCCAACGGAGGTTCGGGCAGTTCTCCAAGCAGCTCGCCAAAGGTTCCCATTGAAGGCTCTTTTGGTGGTATTTCAGCCTCATACTTACAGTCGTCTGGCAGCACTGAAGAGTGACTTTGCCACTGCATTCAGTGATGCAGACCAAGTTTTGGTTACAGAGATTTATGCCGCCAGAGAAACTAATGTTTGGAATGTCAGCGGAAAGGATCTGGCTACTTCTATCATTGGGCCACCATCTGAGTACATCCCTTCCCTGGGGGATGTGGTAGACAAGTTAGCGCATCAGATTTCCTTGGAACCTGATCGAGAAACAGTTGTGTTTACACTTGGAGCAGGTGATATTACTACCGTGGGGCCAAAGTTGCTCCATGAATTGCAGGGAAGGCTACAAAAGTGA 1719 0.4363 MEFSAISPSNSLHFPTNFLGKIMTHFMVRPRNATFSCRTLQIQTLASNLEESSRVSFSTRSRADIKNEESFVLGNRKGWIHFVGIGGSGLSALAMLALKQGFEVSGSDIVWSSFLDGLKETGAQLHLGHSESNIQRNNGSSLPDAIVVSSAIPQDNLEILHAKSVGIPVYKRGNWLGKLTEHYNLIAVSGTHGKSTTASMLAYVLKSMGDDLTAVVGAQVPQFGGGNIMSGSGRNFVLEADEYDCCFLGLLPYIAVVTNVDWEHVDIFPDEEAVKAIFRRFLKQIRVGGHLILCGDSAGACSLLDDTEESTVADHSSGKLSTLNSDKCSDGYRITTFGISRTNEWHALSIRPNSQGGSDFVLCHRGYPVANITLQIPGVHNVLNSLAVIATVMALVSDGRQSYESINCVKIHLNNFVGVSRRFELIGTVCGCLIYDDYAHHPTEVRAVLQAARQRFPLKALLVVFQPHTYSRLAALKSDFATAFSDADQVLVTEIYAARETNVWNVSGKDLATSIIGPPSEYIPSLGDVVDKLAHQISLEPDRETVVFTLGAGDITTVGPKLLHELQGRLQK* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0977 572 Gene3D - 73 171 - -
Vvi16g0977 572 PANTHER UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED 76 570 - -
Vvi16g0977 572 Pfam Mur ligase family, catalytic domain 80 183 IPR000713 GO:0009058|GO:0016881
Vvi16g0977 572 SUPERFAMILY MurCD N-terminal domain 80 170 - -
Vvi16g0977 572 Gene3D - 173 417 IPR036565 GO:0005524|GO:0009058
Vvi16g0977 572 SUPERFAMILY MurD-like peptide ligases, catalytic domain 169 395 IPR036565 GO:0005524|GO:0009058
Vvi16g0977 572 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 418 564 IPR036615 GO:0009058|GO:0016881
Vvi16g0977 572 Pfam Mur ligase family, glutamate ligase domain 419 501 IPR004101 GO:0009058|GO:0016881
Vvi16g0977 572 Gene3D - 418 571 IPR036615 GO:0009058|GO:0016881
Vvi16g0977 572 Pfam Mur ligase middle domain 188 391 IPR013221 GO:0005524|GO:0009058|GO:0016881
Vvi16g0977 572 NCBIfam UDP-N-acetylmuramate--L-alanine ligase 80 562 IPR005758 GO:0008763
Vvi16g0977 572 Hamap UDP-N-acetylmuramate--L-alanine ligase [murC]. 77 568 IPR005758 GO:0008763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0977 - - vvi:100855090 1125.92