Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0965 ATGGTGGTTCTGAGACTACCTTCTCTCTCCTCCCTCTTCTCGCCCTCGGCCGCCATCTCCCGTCGGTTTCCGGAGGTTCTCCGGAGCCGCCACCATGTCCGGCGCTTCAGCGGAGTCTCCGCCCAGAGCACGGCAGAGAAAGAGGCCTCGCCGGAGACCGAGCCGGTCCGAGTCGCGGCGCAGAAGGATCGAATCGAGGACCAAAGCGTCACGCCTCGGTCTCAGGACTTCAATGCTTGGTACCTTGACGTCATAGCCAACGCCGAGCTCGCTGATTACGGTCCGGTTCGCGGCACCATGGTTATTCGTCCTTACGGTTACGCCATTTGGGAAGCAATTCAGGATTATTTGAACGTGAAATTCAAGGAGACTGGCCACAGCAACATGTATTTCCCGCAGTTTATACCATACTCATTTATTGAAAAAGAAGCAAGCCATGTTGAAGGTTTCAGTCCAGAATTAGCACTTGTGACAATTGGAGGGGGAAAGGAACTTGAAGAAAAACTTGTGGTTCGACCTACAAGTGAAACCATAGTAAACCACATGTTCACTCAGTGGATTCATAGCTACCGTGATCTTCCTCTCATGATTAATCAGTGGGCAAATGTTACGAGATGGGAGATGCGGACAAAACCATTTGTGAGGACTCTTGAATTTCTCTGGCAAGAGGGCCACACTGCTCATGCCACCCCTGAAGAGGCAGAAAAAGAGGCATTACAGATGATTGATGTCTATACAAAATTTGCTTATGAGCAAGCTGCAATACCTGTTATTACAGGTCGAAAATCAAAAGTGGAGACATTTGCTGGTGCTGTTAGGACCTATACAATTGAGGCTATGATGGGTGATCGGAAGGCTCTACAGGCTGGAACCAGCCACAACCTTGGACAGAATTTTTCTCGTGCTTTTGGAACACAGTTCACTGATGAAAATGGACAAAGACAACACATATGGCAGACATCATGGGCAGTCAGCACCCGTTTTATTGGTGGTATCATCATGACCCATGGAGATGATGCTGGTTTGATGCTTCCCCCAAAAATTGCTCCAATACAGGTGGTAATCATACCAATCTGGAAGAAGGCTGATGAAAAAACAGGAGTTCTCAATGCTGCATCATCTGTGACAGAAGTTTTAAAATCTGCAAATATTAAAGTTAAAGTTGATGACTCAGATCAGAGAACCCCTGGATGGAAATTCAATTTCTGGGAGATGAAGGTCTTTCCTTTAAGGATTGAAATTGGTCCTCGTGATGTTTCAAGCGGGAGTGTCGTCATATCTAGGAGAGATGTTCCTGGAAAGCAAGGGAAAGTTTTTGGGATATCTATGGAACCTTCAATTTTGGTAGCATATGTCAAAGATAAGTTGGATGAGATTCAGTCATCACTTTTGGAAAGGGCAACGTCCTATCGAGATAGTAACATTGTGGATGTCAGCTCCTATGATGAGCTGAAAGAGGCCATTTCTCAGGGAAAATGGGCAAGGGGTCCTTGGTCGGCTAGTGATGCAGAGGAACTAAGAGTGAAAGAAGAAACAGGGGCAACGATTCGGTGTTTCCCTTTTGAACAGCCTCAAGGCATGAAAACATGCCTGATGACAGGCGATCCAGCTGAAGAAGTTGCACTTTTCGCAAAATCGTATTAA 1644 0.4653 MVVLRLPSLSSLFSPSAAISRRFPEVLRSRHHVRRFSGVSAQSTAEKEASPETEPVRVAAQKDRIEDQSVTPRSQDFNAWYLDVIANAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEALQMIDVYTKFAYEQAAIPVITGRKSKVETFAGAVRTYTIEAMMGDRKALQAGTSHNLGQNFSRAFGTQFTDENGQRQHIWQTSWAVSTRFIGGIIMTHGDDAGLMLPPKIAPIQVVIIPIWKKADEKTGVLNAASSVTEVLKSANIKVKVDDSDQRTPGWKFNFWEMKVFPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILVAYVKDKLDEIQSSLLERATSYRDSNIVDVSSYDELKEAISQGKWARGPWSASDAEELRVKEETGATIRCFPFEQPQGMKTCLMTGDPAEEVALFAKSY* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0965 547 Hamap Proline--tRNA ligase [proS]. 70 547 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g0965 547 Gene3D - 476 547 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g0965 547 SUPERFAMILY C-terminal domain of ProRS 475 547 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g0965 547 FunFam Proline--tRNA ligase 65 345 - -
Vvi16g0965 547 SUPERFAMILY Class II aaRS ABD-related 341 473 - -
Vvi16g0965 547 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 164 333 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi16g0965 547 Gene3D - 346 471 IPR036621 -
Vvi16g0965 547 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 97 345 IPR006195 -
Vvi16g0965 547 Pfam Anticodon binding domain 352 435 IPR004154 -
Vvi16g0965 547 CDD ProRS_anticodon_zinc 341 547 - -
Vvi16g0965 547 Pfam Prolyl-tRNA synthetase, C-terminal 481 547 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g0965 547 PRINTS Prolyl-tRNA synthetase signature 128 146 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g0965 547 PRINTS Prolyl-tRNA synthetase signature 199 207 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g0965 547 PRINTS Prolyl-tRNA synthetase signature 169 180 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g0965 547 PRINTS Prolyl-tRNA synthetase signature 208 219 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g0965 547 SUPERFAMILY Class II aaRS and biotin synthetases 76 339 IPR045864 -
Vvi16g0965 547 CDD ProRS_core_arch_euk 76 335 IPR033721 -
Vvi16g0965 547 SMART ProRS_C_1_2 481 547 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g0965 547 NCBIfam proline--tRNA ligase 72 547 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g0965 547 Gene3D Bira Bifunctional Protein; Domain 2 70 345 IPR045864 -
Vvi16g0965 547 PANTHER PROLYL-TRNA SYNTHETASE 42 547 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g0965 547 MobiDBLite consensus disorder prediction 38 70 - -
Vvi16g0965 547 MobiDBLite consensus disorder prediction 50 70 - -
Vvi16g0965 547 FunFam Proline--tRNA ligase, chloroplastic/mitochondrial 346 470 - -
Vvi16g0965 547 FunFam Proline--tRNA ligase, chloroplastic/mitochondrial 476 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0965 Vvi-Chr16 17881747 17897817 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0965 K01881 - vvi:100262997 1075.46