Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0963 ATGGAGACGCCGCTGCTCAACGGCGGCGCCGAAGAGGGATACGGTGGCGCGGACGGAGACTACCAGCCTTTGAGGAGCTGGAGGGAAGTGAGGTCAATGGTGTGGAAGGAGACAGTGAAGCTGTGGAGAGTTGCTGGGCCTTTGGCTTTCCAAATACTGTGTCAGTTCGGCACCAACTCGATGACCAGTGTGTTTGTGGGTCATATCGGAAACCTTCAGCTATCTGCTGTCTCCATTTCCCTCTCTGTCATTGGCACCTTCTCTTTTGGCTTCATGCTTGGTATGGGGAGTGCACTAGAGACCTTATGTGGACAAGCTTATGGTGCTGGACAAGTCCACTTGCTTGGGGTTTACTTGCAGAGATCATGGATAATTCTATTGGTAACCTGTGTCATCCTCTCGCCAGTATACGTATTTGCCACCCCAATCCTAAAGGTCCTTGGGCAAGAAGATGCCATAGCTGATCTTGCTGGACAATTCACTATTGAAACCATTCCTCAATTGTTCTCACTCGCCATCATCTTCCCCACCCAGAAGTTCCTTCAAGCCCAAAGCAAGGTGAATGTGCAAGCAACTATTGCTTTTGTGGCTCTAATCCTGCACATTGGAATGCTTTCGGTCTTCATTTTTGTGTTCGGTTGGGGCACGACTGGTGCAGCCATAGCTTATGACATATCGAATTGGGTGATTGCCGTGTCTCAAGTTGTCTATGCTATTGGTTGGTGCAAAGAAGGATGGACAGGATTAACATGGTCAGCTTTCAGGGATATTTGGGCTTTTGTTCGGCTTTCAATTGCCTCGGCTGTGATGCTTTGCCTAGAGATCTGGTATTTTACGATCATAGTCCTTCTCACTGGCCACCTTCAAAATGCAGTCATCGCAGTTGGGTCCCTTTCTATTTGCATGGCTTTTAATGGGTGGGAAGGCATGTTGTTCATTGGGATGAATGCTGCTCTGAGCATTCGGGTCTCCAATGAGCTCGGATATGGACATCCAAGAGCAGCCAAGTTCTCTGTCTATGTTGCAGTCTCTCAGTCTCTCCTTATTGGGATTTTGTGCATGGTGGTGGTCTTGTTAGCTAGAGACTACATTGCCTTCATTTTCACTAGCAACAAGGAAATGCAAGAGGCTGTTTCTAACCTAGCATATCTTCTTGGTGCCACCATGCTTCTGAACAGTATGCAGCCAGTCTTATCAGGCGTTGCCGTCGGAAGCGGATGGCAAGCCTTGGTGGCTTACATCAACTTGGGTTGCTATTACATTATTGGGGTCCCTCTCGGCTGCCTTCTCGGTTACCTAGCAAAATTCGGAGTGAAAGGACTTTGGGGGGGCATGATATGTGGAACAGCTTTGCAGACATTGATTCTGTTGTTCATAGTTTACAGAACCAATTGGAACAAGGAGGTGGAGCAAACAACAGAGAGGATGCAGAAGTGGGGAGGAGTACAGATTGAAACCGAGAAGACGAGTGATGATGTCTGA 1482 0.4811 METPLLNGGAEEGYGGADGDYQPLRSWREVRSMVWKETVKLWRVAGPLAFQILCQFGTNSMTSVFVGHIGNLQLSAVSISLSVIGTFSFGFMLGMGSALETLCGQAYGAGQVHLLGVYLQRSWIILLVTCVILSPVYVFATPILKVLGQEDAIADLAGQFTIETIPQLFSLAIIFPTQKFLQAQSKVNVQATIAFVALILHIGMLSVFIFVFGWGTTGAAIAYDISNWVIAVSQVVYAIGWCKEGWTGLTWSAFRDIWAFVRLSIASAVMLCLEIWYFTIIVLLTGHLQNAVIAVGSLSICMAFNGWEGMLFIGMNAALSIRVSNELGYGHPRAAKFSVYVAVSQSLLIGILCMVVVLLARDYIAFIFTSNKEMQEAVSNLAYLLGATMLLNSMQPVLSGVAVGSGWQALVAYINLGCYYIIGVPLGCLLGYLAKFGVKGLWGGMICGTALQTLILLFIVYRTNWNKEVEQTTERMQKWGGVQIETEKTSDDV* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0963 493 Pfam MatE 47 203 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi16g0963 493 Pfam MatE 267 427 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi16g0963 493 NCBIfam MATE family efflux transporter 47 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi16g0963 493 CDD MATE_eukaryotic 37 471 IPR045069 GO:0042910|GO:1990961
Vvi16g0963 493 PANTHER MULTIDRUG RESISTANCE PROTEIN 30 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0963 Vvi-Chr16 17837265 17840061 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0963 K03327 - vvi:100268149 964.14