Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0960 ATGGAGACGCCGCTGCTCAAGAGCGGCGCCGAAAGGGGATACGGCGGCGAAGGCGGGGACTACCCGCCTTTGACGAGCTGGAGGGAAGTGAGGTCAATGTTGTGGAGAGAGACAGTGAAGGTGTGGAGAGTTGCTGGGCCTTTGGCTTTCCAAATACTGTGTCAGTTCGGAACCAACTTGGTGACCACTGTGTTTGTTGGTCATATCGGAAACCTTGAGCTCTCTGCTGTCTCCATTTCCGTCTCTGTCATTGGAACCTTCTCTTTTGGCTTCATGCTTGGTATGGGGAGTGCGCTGGAGACCTTATGTGGACAAGCTTATGGTGCTGGACAAGTCCAGTTGCTTGGGGTTTACTTGCAGAGATCATGGATAATTCTATTAGTAAGCTGTATCATCCTCTTGCCAATATACATCTTTGCCACCCCAATCCTAAAGGCCCTTGGGCAAGAAGACGAGATAGCTGATCTTGCTGGACAATTCACTCTCGAAACCATTCCTCAATTGTTCTCGCTTGCCATCATCTTCCCCACCCAGAAGTTCCTTCAAGCCCAAAGTAAGGTGAATGTGCAAGCAACTATCTGTTTTGTGGCTCTAATCCTGGACATTGGAATGCTTGCGGTCTTCATTTTTGTGTTCGGTTGGGGCACGACTGGTGCAGCCATAGCTTATGACATCTCGAGTTGGGTGACCGCCGTGGCTCAAGTAGTCTATGCTATCAGTTGGTGCAAAGAAGGATGGACAGGATTAACATGGTCAGCTTTCAGGGAGATTTGGGCTTTTGTTCGGCTTTCACTTGCCTCCGCTGTGATGCTTTGCCTAGAGATCTGGTATTTTATGATCATAATCCTTCTCACCGGCCACCTTCAAAATGCAGTTATCGCAGTTGGGTCCCTTTCTATTTGCATGACTTTTGGTGGGTTGGAGGTCGTGATGTTCATGGGGATGAATGCTGCTGTGAGCATTCGGGTCTCCAATGAGCTCGGATATGGACACCCACGAGCAGCCAAGTACTCTGTCTTTGTCGCAGTCTCTCAGTCTCTCCTTATTGGGATTTTCTGCATGGTGGTGGTGTTGTTAGCTAGAGACTACATTGCCATCATTTTCACTACCAACAAGGAAATGCAAGAGGCTGTTTCTCACCTAGCTTATCTTCTGGGCGTCACCATGCTTCTTAACAGTCTGCAGCCTGTCTTTTCAGGCGTTGCTGTCGGAGGCGGATGGCAAGCCATGGTGGCTTACATCAACTTGGGTTGCTACTACATTCTTGGAATCCCTCTAGGCTACCTTCTAGGTTACAAAGCAAAACTGGGGGTGCAGGGACTTTGGGGGGGCATGATATGCGGAACTGCTTTGCAGACATTGGTACTATTGTTCATAGTATACAGAACCAACTGGAACAGGGAGGTAGAACAAACAACAGAGAGGATGCAGAAGTGGGGAGGACAACGGATTGAAGCCGATGATGTATGA 1470 0.4898 METPLLKSGAERGYGGEGGDYPPLTSWREVRSMLWRETVKVWRVAGPLAFQILCQFGTNLVTTVFVGHIGNLELSAVSISVSVIGTFSFGFMLGMGSALETLCGQAYGAGQVQLLGVYLQRSWIILLVSCIILLPIYIFATPILKALGQEDEIADLAGQFTLETIPQLFSLAIIFPTQKFLQAQSKVNVQATICFVALILDIGMLAVFIFVFGWGTTGAAIAYDISSWVTAVAQVVYAISWCKEGWTGLTWSAFREIWAFVRLSLASAVMLCLEIWYFMIIILLTGHLQNAVIAVGSLSICMTFGGLEVVMFMGMNAAVSIRVSNELGYGHPRAAKYSVFVAVSQSLLIGIFCMVVVLLARDYIAIIFTTNKEMQEAVSHLAYLLGVTMLLNSLQPVFSGVAVGGGWQAMVAYINLGCYYILGIPLGYLLGYKAKLGVQGLWGGMICGTALQTLVLLFIVYRTNWNREVEQTTERMQKWGGQRIEADDV* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0960 489 PANTHER MULTIDRUG RESISTANCE PROTEIN 30 465 - -
Vvi16g0960 489 Pfam MatE 267 429 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi16g0960 489 Pfam MatE 47 202 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi16g0960 489 NCBIfam MATE family efflux transporter 47 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi16g0960 489 CDD MATE_eukaryotic 37 471 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0960 Vvi-Chr16 17819178 17822079 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0960 K03327 - vvi:100256121 943.725