Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0958 ATGAGACCTCCAGCAGGAAGAGGCCGTGGAGGTGGCGGTTTCGGAGGTGGCGGTTTCAGAGGCAGAGGCGATGGAGGAAGGGGCAGAGGCAGAGGAGGGTTTGGTGGAAGAGGTGGCAGTGACATGAACAGCCGGGGTGGTGGTCGTGGCGACCGTGGTGGTCGTGGTGGTCGTGGCGGCGGGAGAGGCCGTGGTGGACGCGGAGGTGGCGGAATGAAAGGTGGAAGCAGGGTTGTAGTTGAGCCCCATAGGCATGAGGGGGTGTTCATTGCTAAGGGCAAAGAAGATGCACTTGTTACTAAGAATATGGTCCCCGGAGAAGCCGTCTACAATGAGAAAAGAATCTCTGTTCAGAATGAAGATGGAAGCAAAATTGAATACAGGGTTTGGAACCCCTTCCGTTCAAAGTTGGCTGCTGCCATTCTTGGTGGTGTTGATGAGATCTGGATTAAACCTGGTGCTCGAGTTCTCTACCTTGGTGCTGCCTCAGGGACCACTGTTTCCCATGTCTCGGATGTTGTTGGCCCTACTGGAGTGGTTTATGCAGTGGAATTTTCTCACAGAAGTGGTAGGGACTTGGTTAACATGGCAAAGAAGCGGACAAATGTTATTCCCATCATTGAAGATGCTAGACATCCAGCAAAGTACAGAATGCTGGTTGGCATGGTTGATGTGATATTTTCCGATGTTGCACAGCCTGATCAGGCCAGGATTTTGGCACTAAATGCATCGTACTTCCTGAAAGCTGGAGGTCATTTTGTTATATCAATCAAGGCAAACTGTATAGATTCGACAGTCCCAGCAGAAGCAGTATTTGCCCAGGAAGTGAAGAAGCTGCAAGCGGATATGTTCAAGCCTTCTGAGCAGGTCACCCTTGAACCCTTTGAGCGAGACCATGCTTGTGTGGTTGGTGGGTACAGAATGCCAAAGAAACAAAAGCCCACAGCTTAG 951 0.51 MRPPAGRGRGGGGFGGGGFRGRGDGGRGRGRGGFGGRGGSDMNSRGGGRGDRGGRGGRGGGRGRGGRGGGGMKGGSRVVVEPHRHEGVFIAKGKEDALVTKNMVPGEAVYNEKRISVQNEDGSKIEYRVWNPFRSKLAAAILGGVDEIWIKPGARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFAQEVKKLQADMFKPSEQVTLEPFERDHACVVGGYRMPKKQKPTA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0958 316 Gene3D Phosphorylase Kinase; domain 1 75 130 - -
Vvi16g0958 316 PIRSF Nop17p 43 310 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vvi16g0958 316 ProSitePatterns Fibrillarin signature. 178 192 IPR020813 GO:0003723|GO:0006364|GO:0008168
Vvi16g0958 316 FunFam Fibrillarin like 1 131 308 - -
Vvi16g0958 316 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 94 307 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vvi16g0958 316 Gene3D Vaccinia Virus protein VP39 131 308 IPR029063 -
Vvi16g0958 316 PRINTS Fibrillarin signature 126 145 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vvi16g0958 316 PRINTS Fibrillarin signature 203 232 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vvi16g0958 316 PRINTS Fibrillarin signature 233 262 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vvi16g0958 316 PRINTS Fibrillarin signature 98 117 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vvi16g0958 316 PRINTS Fibrillarin signature 153 174 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vvi16g0958 316 PRINTS Fibrillarin signature 178 195 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vvi16g0958 316 PRINTS Fibrillarin signature 285 306 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vvi16g0958 316 Pfam Fibrillarin 80 307 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vvi16g0958 316 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 8 312 - -
Vvi16g0958 316 MobiDBLite consensus disorder prediction 1 77 - -
Vvi16g0958 316 FunFam Fibrillarin like 1 75 130 - -
Vvi16g0958 316 SMART Fibrillarin_2 80 308 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vvi16g0958 316 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 78 304 IPR029063 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0958 K14563 - vvi:100266267 493.812