Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0955 ATGGCTGGTCGCTACGAGATAGAGCTGATTATCTCCTCCGCCAAAGATCTGAAGAACGTCAACTGGCGTCACGGCTCTCTGAAGCCATACGTCGTGGTTTGGGTGGATCCTGCGGCCAAGCTCTCCACCAAAGTCGACAACGACGGCGACACCTTTCCTTGCTGGAACGAGACTCTACTCATTCCAGTGCCCTCCCGGATCGAAGACTCCACACTCTACCTCGACGTTGTCCATCTCAAAGCCGATGACGAAGACGACACCAAGCCGGTCGTCGGCTCCGCTCGCCTCTTCCTCCGCGACGTCGTCGATGACGTCGGCTTCGGCGCCCAGGCCATCCGCACTCTCGAGCTCCGCCGCCCCTCTGGCCGCCCTCATGGCAAGGTGGAAGTCAAGGTCTCTGTGAGAGATCCGCGCTACCGTGCGCCTGGGTCTGCCTACTCACCCCCTTACGGCGTGCCCCCGCCAGCGGGAACCAGAGGCGCAGGCTACGCGGCTTCCCCGGCTTACGCCACTCCATACGGCGCACCCCCACCTGATCCTTACTACTCCAATGCACCACCCTACGGCCAAGACCCCTACAGACAGCCGGCATATGGGCAGCCTCAGCCAAGATACGGAGATCCGGCGTACGGACAAGGGCCATACGCGCAGGGGCCATACGGACAGACGGTGGTGGAGCAGCCGCAGAAGAAGTCAGGGATGGGGATGGGGACGGGACTGGCAGTGGGCGCAGTCGCAGGGGTCTTGGGTGGGCTGGCAATATCGGAGGGCGTGGATGCTTTGGAGGATCACATTGCTGATGACGTGGAAGATAGGATCGATGGTGATGACTTGGAAGATTACGATGGTGATGACTTTTGA 861 0.6086 MAGRYEIELIISSAKDLKNVNWRHGSLKPYVVVWVDPAAKLSTKVDNDGDTFPCWNETLLIPVPSRIEDSTLYLDVVHLKADDEDDTKPVVGSARLFLRDVVDDVGFGAQAIRTLELRRPSGRPHGKVEVKVSVRDPRYRAPGSAYSPPYGVPPPAGTRGAGYAASPAYATPYGAPPPDPYYSNAPPYGQDPYRQPAYGQPQPRYGDPAYGQGPYAQGPYGQTVVEQPQKKSGMGMGTGLAVGAVAGVLGGLAISEGVDALEDHIADDVEDRIDGDDLEDYDGDDF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0955 286 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 136 IPR035892 -
Vvi16g0955 286 MobiDBLite consensus disorder prediction 177 221 - -
Vvi16g0955 286 Pfam C2 domain 7 100 IPR000008 -
Vvi16g0955 286 PANTHER INGRESSION PROTEIN FIC1 7 247 - -
Vvi16g0955 286 MobiDBLite consensus disorder prediction 269 286 - -
Vvi16g0955 286 MobiDBLite consensus disorder prediction 266 286 - -
Vvi16g0955 286 Gene3D C2 domain 4 143 IPR035892 -
Vvi16g0955 286 SMART C2_3c 6 110 IPR000008 -
Vvi16g0955 286 CDD C2_SRC2_like 6 130 IPR044750 GO:0006952
Vvi16g0955 286 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0955 Vvi-Chr16 17795815 17796675 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0955 - - vvi:100249100 479.944