Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0954 ATGGCTAGGGTTAGCATAACCCAACAACCAGAATCCCCCACAGCCCCATGTCTTCCAAAGATAGTCGGAATGAAAGAAAAGAGAGAACAGGGGTCTAGGAGTAGTCTCACATCACCACTAATGCCATTGAAGCCCTGTACTGAAGAACAGGTCTCCGGATCCAACCCTCCTAATCTTCCTAATTATGTGGATTATCGCGAAGAATATGCTAATGCCTTCCGCACTGAATCATACATTGAGTTTTGGACACGTGTCCTTACTCTAACCCATGGAGATAGCGCCACGTCAATTCCCATAGAGTCCACCACTGCGGCTCGGCTCTCATCCTACCGGCTCTTCGCTGAATATCTCTTAGATCCGGACCAACCCACTGTCACTCAACTATTGGCTTTGGCTCAAAGCAGACCCAAAAACCACTCTATTCTAGCCGAATACTTTTCTGAAACGGCTAACGCTTCTTTCCTGTGTAGCCTTCTGCTAAAGGATATTAACCGTATACGTGTTTGGTACCGATCCTTGAAATCCACCCTGGAATCTCATGGAGCCACTGAGTTACTACCCGTAAACCGCTTTCCAGTAATATTGGCTCGGGTTCGGGTCATCCAAACCGGCTGCTCTGGCTTACTCAAGCGGTTAGAGTTAGGACGTGACAAGGCTCGAGCCAAGCTCCAGCTCGTCAAAAGCATAAAATGCGGCTCAGCTATTTTGCTTGTCGCGCTAACGGCTTCGGTGGCTGTAATCGCCACAACTCACGCCTTAGCAATGTTGGTGGCTGCACCAGGTCTCATAGCGGCTTCATTTGAGTTAGCCTCGACTAGGAAATTAGCCAGGCGGTCGGCTCAGCTTGACGCAGCTGCCAAAGGAACTTACATACTGAACAAGGATATGGACATGATAAGCCGGCTTGTGGCCAGGCTAAACAATGAGCTGGAGCATATAAGTGGAATGGTTAGGTTTTGGTTGGAGCATAAAGAGGATAACCTGCAAGCCAGTGGAGAAGTGGCGCGCCAGCTGAAGGAGAATGACTCTAACTTTAGCCAGCAGCTAGATGAGCTAGAAGAGCATTTATACTTATGTTTCATGACCATTAATAGAGGGAGAACCCTTGTGGTGAAGGAGATTATGGACCAGGGTCCACCCACTTGCTCATCAAAATAA 1158 0.4827 MARVSITQQPESPTAPCLPKIVGMKEKREQGSRSSLTSPLMPLKPCTEEQVSGSNPPNLPNYVDYREEYANAFRTESYIEFWTRVLTLTHGDSATSIPIESTTAARLSSYRLFAEYLLDPDQPTVTQLLALAQSRPKNHSILAEYFSETANASFLCSLLLKDINRIRVWYRSLKSTLESHGATELLPVNRFPVILARVRVIQTGCSGLLKRLELGRDKARAKLQLVKSIKCGSAILLVALTASVAVIATTHALAMLVAAPGLIAASFELASTRKLARRSAQLDAAAKGTYILNKDMDMISRLVARLNNELEHISGMVRFWLEHKEDNLQASGEVARQLKENDSNFSQQLDELEEHLYLCFMTINRGRTLVVKEIMDQGPPTCSSK* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0954 385 PANTHER UPF0496 PROTEIN 3-RELATED 61 376 IPR007749 -
Vvi16g0954 385 Coils Coil 321 355 - -
Vvi16g0954 385 MobiDBLite consensus disorder prediction 26 59 - -
Vvi16g0954 385 Pfam Protein of unknown function (DUF677) 208 374 IPR007749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0954 Vvi-Chr16 17785256 17787065 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0954 - - vvi:100244074 652.129