Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0948 ATGGCTATGGCTGTTTCTGCAAAGCTGGTTCTAGGCTCAATTGCCTTTGCAATATTCTGGGTGTTGGCGGTTTTTCCTGCTGTCCCTTTCCTACCTATTGGGAGGACTGCAGGGTCTCTCCTGGGGGCAATGCTCATGGTCAGTTTTCGTGTGATAACCCCAGATCAAGCATATGATGCCATTGATCTCCCAATCCTTGGTCTTCTGTTTGGGACTATGGTTGTCAGCATTTATCTTGAAAGAGCAGATATGTTCAAATATTTGGGTAAACTTCTCTCATGGAAAAGCTTAGGAGCCAAAGACTTACTATGTCGAATCTGCCTCATATCGGCCATTTCAAGTAGTCTTTTCACCAATGATACCACTTGTGTCGTCTTGACCGAATTTGTTCTGAAAATTGCAAGGCAGCATAATCTTCCACCCCATCCTTTCCTTTTAGCCCTTGCCTCAAGTGCAAATATTGGGTCTTCTGCAACTCCAATTGGCAACCCGCAAAATCTTGTTATAGCCCTCGAGAGTAAGATTTCATTCGGGGATTTCGTACTTGGAATTCTTCCTGCAATGCTTGTAGGAGTACTTGTGAATGCTTTAATTCTTCTTTGCATGTATTGGAGGTTGTTGTCTGTTCAGAAAGACGAAGAAGATGCAACTCTAGAAGTGGTAGCCGAGGAGGATGTCAATTTTCATCATTTTTCACCTGCAACAATGTCACATATAACATCCTTAGATTCTCACGAATGGAATTCAAAAGCCGAAATTGTGAATATCGACAGCCAGGCTAATGTGAAGGGAAACATAGGTCATGCTGAGACCCTCAGAAATCGAATAAGAAACGAAAATGAACTCCATAGGACCTCCAGTTCTGGGTCTGTGTCCTCTGCAAATTCAAATGGTTCAAAAGATCTGACAAGTGAGTTACATTCTCAAAGAAGGGACGAAAATCAAAATATACTTTCAAATGGGACTGCATCAATGGATGAACCAGGAGATGCAGTCTTTATGCAGTCTTTAGACGAAAAGGAAAATCCGACCACAAAATGGAAAAGGCTATTATGGAAACCATGTGTTTACCTTGTTACTATAGGAATGCTGATTTCTTTGCTCATGGGTCTCAATATGTCATGGACTGCAATTGCTGCTGCACTGGCTCTTGTAGTTCTTGATTTCAAGGATGCTCGGCCTTCCCTAGAGAAGGTCTCCTATTCCCTTTTGATTTTCTTCTGCGGAATGTTCATTACAGTTGATGGTTTCAACAAAACTGGAATCCCTAGCGCAGTATGGGACTTAATGGAGCCTTACGCAAAGATTGACCATGTTAGTGGGATCGCAGTTCTTGCTGTTGTCATACTTGTCCTGTCAAATGTGGCTTCTAATGTACCAACCGTTCTCTTGCTTGGAGCACGGGTGGCAGCATCAGCAGCTCAAATTTCCGCAGCCGAAGAGAAGAAGGCATGGCTGATCTTAGCTTGGGTCAGCACTGTGGCCGGAAACCTCTCCCTGTTGGGATCAGCTGCCAACTTGATAGTTTGTGAGCAGGCTCGCCGGGCTCAACACCTTGGGTACACTCTATCCTTCTGGAGGCATCTCAAATTTGGAGTTCCCGCCACTCTTGTAGTCACTGCCATTGGTTTGACACTAATAAGAGGATGA 1650 0.44 MAMAVSAKLVLGSIAFAIFWVLAVFPAVPFLPIGRTAGSLLGAMLMVSFRVITPDQAYDAIDLPILGLLFGTMVVSIYLERADMFKYLGKLLSWKSLGAKDLLCRICLISAISSSLFTNDTTCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIALESKISFGDFVLGILPAMLVGVLVNALILLCMYWRLLSVQKDEEDATLEVVAEEDVNFHHFSPATMSHITSLDSHEWNSKAEIVNIDSQANVKGNIGHAETLRNRIRNENELHRTSSSGSVSSANSNGSKDLTSELHSQRRDENQNILSNGTASMDEPGDAVFMQSLDEKENPTTKWKRLLWKPCVYLVTIGMLISLLMGLNMSWTAIAAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSAVWDLMEPYAKIDHVSGIAVLAVVILVLSNVASNVPTVLLLGARVAASAAQISAAEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRAQHLGYTLSFWRHLKFGVPATLVVTAIGLTLIRG* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0948 549 MobiDBLite consensus disorder prediction 282 311 - -
Vvi16g0948 549 CDD YbiR_permease 28 547 - -
Vvi16g0948 549 PANTHER TRANSPORTER ARSB-RELATED 1 547 - -
Vvi16g0948 549 MobiDBLite consensus disorder prediction 283 303 - -
Vvi16g0948 549 Pfam Citrate transporter 27 495 IPR004680 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0948 Vvi-Chr16 17723710 17726361 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0948 - - vvi:100259320 1028.85