Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0946 ATGTGGTGGTTTGGAAGGAATGGGGCATCTGGGTTCTCAGCTTCATCCACAGCAGTGGAAGTTACTCATGGAATTGATGGGACTGGCCTCACTGCCATTGTTACAGGAGCATCGAGTGGTATTGGCACTGAAACTGCACGGGTTCTTGCATTGCGTGGTGTCCATGTAGTTATGGCAGTTAGGAATATGGCTGCTGGTAGGGAGGTCAAAGAAGCAATAGCTAAGGAGATCCCTACAGCAAAAATTGATGCTATGGAGTTGGACCTTAGTTCAATGGCATCAGTAAGGAAATTTGCATCAGAATTCAGTTCCTCGGGTCTTCCTCTCAACCTCCTCATTAACAATGCAGGACTCATGGCGACACCATTCATGCTTTCCAAAGACAACATAGAACTACAGTTTGCAACAAACCACATAGGTCATTTTCTTTTGACAAATCTATTGTTAGAGACCATGAAAAAGACAGCACGTGAAAGTAACAAAGAAGGAAGGATTGTAAATGTCTCATCAAGACGTCACCGCTTCTCATATCATGAAGGAATTCGTTTTGACATGATCAATGATCAATCAGGGTACAATAGGCTTAGTGCATATGGCCAGTCAAAGCTTGCTAACGTTTTGCATGCTAACGAACTATCAAGACGTCTAAAGGATGATGGAGCGAATATAACCGCAAATTCACTTCACCCAGGAGCAATAGCCACCAACCTTTTCCGCCATGTCCCCCTAGTTGGAGGTTTCATTGACATTTTTGGTAAATATGTGGTTAAAAATGTGCAGCAGGGGGCAGCAACAACATGCTATGTGGCATTGCATCCTGAGGTTAAGGGGACAACCGGCGAATACTTTGCAGACAGTAACATAGCCAAGGGAAGTTCACAAGCAAATGATCCAGAGTTGGCAAAGAAACTGTGGGATTTTAGCTTGAGTTTGATCAAATGA 942 0.4374 MWWFGRNGASGFSASSTAVEVTHGIDGTGLTAIVTGASSGIGTETARVLALRGVHVVMAVRNMAAGREVKEAIAKEIPTAKIDAMELDLSSMASVRKFASEFSSSGLPLNLLINNAGLMATPFMLSKDNIELQFATNHIGHFLLTNLLLETMKKTARESNKEGRIVNVSSRRHRFSYHEGIRFDMINDQSGYNRLSAYGQSKLANVLHANELSRRLKDDGANITANSLHPGAIATNLFRHVPLVGGFIDIFGKYVVKNVQQGAATTCYVALHPEVKGTTGEYFADSNIAKGSSQANDPELAKKLWDFSLSLIK* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0946 313 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Vvi16g0946 313 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Vvi16g0946 313 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Vvi16g0946 313 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Vvi16g0946 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 288 IPR036291 -
Vvi16g0946 313 Pfam short chain dehydrogenase 31 172 IPR002347 -
Vvi16g0946 313 PANTHER RETINOL DEHYDROGENASE 10 313 - -
Vvi16g0946 313 CDD retinol-DH_like_SDR_c_like 29 305 - -
Vvi16g0946 313 Gene3D - 22 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0946 Vvi-Chr16 17700905 17707384 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0946 31 170 Acyl Lipid Metabolism Gene Families AT1G62610 32.215 6.10e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0946 - - vvi:100247484 615.535