Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0945 ATGTGGTTGTTCAGCAGAAAGGGAGCATCTGGGTTCTCAGGTTCTTCAACAGCTGAGGAAGTTACTCAAGGAATTGATGGCACTGGTCTTACTGCCATTGTTACAGGAGCATCAAGTGGCATTGGCACTGAAACAACTCGTGTTCTTGCATTGCGTGGTGTCCATGTCGTTATGGGGGTCAGGAATATGGCGGCTGGTCAAGAGGTAAAAGAGGCAATAGTTAAGGAAATCCCGACCGCTAAAGTTGATGTGATGGAGTTGGATCTAAGTTCAATGGCATCCGTAAGGAAATTTGCATCAGAGTTCAATTCTTCCGGCCTTCCATTGAACATTCTAATAAACAATGCAGGAACTACAGGCCCATACATGCTTTCCAAAGATAACATAGAGATGCTGTTTGCGACAAACCACTTAGGTCATTTTCTTTTGACAAGCTTGTTGTTGGACACGATGAAGAAAACAACGCAGGAAAGTGGCAAAGAGGGAAGGATTGTAATCGTCTCCTCAGAGGGTCACCGATTCACATATCGTGGAGGAATTCGCTTTGACAATATCAATGATAAATCAGGGTATAGCAGTCCATTCGCTTATGGCCAATCAAAGCTTGCTAATGTTTTGCATGCTAATGAGCTTGCACGACGTTTTAAGGAAGATGGGGTGGACATAACTGCTAATTCTCTTCACCCAGGAGCAATTGTCACCAATATTTTCCGTCATAGCAGCATTCTTTCCGGACTGGTTAATACGGTTGGCAAATACGTGCTTAAAAATGTTCAGCAGGGAGCTGCAACCACATGCTATGTGGCATTGCATCCACAGGTGAAGGGGGTGAGCGGCCAATATTTTTCTGACTGTAACATAGCCAAGCCCGGCGCACAGGCCAAAGACCCCGAATTGGCCAAGAAACTCTGGGAATTCAGCACGGGGGAGAGAAGGATGTGGTGGTTCAGCAGAAAGGGACCATCTGGGTTCTCAGCTTCTTCAACAGCAGAGGAAGTTACTCAAGGAATTGATGGCACTGGTCTTACTGCCATTGTTACAGGAGCATCAAGTGGCATTGGCACTGAAACAACTCGTGTTCTTGCATTGCGTGGTGTCCATGTTGTTATGGGGGTCAGGAATATGTCAGCTGGTAAAGAGGTAAAAGAGGCAATAGTTAAGGAAATCCCGACTGCTAAAGTTGATGCGATGGAGTTGGATCTAAGTTCAATGGCATCTGTAAGGAAATTTGCATCAGAGTATAATTCTTCCGGTCTTCCATTGAACATTCTAATAAACAATGCAGGAATTATGGCCGTCCCATACATGCTCTCCAAAGATAACATAGAAATGCAGTTTGCGACAAACCACTTAGGTCATTTTCTTTTGACAAACCTGTTGTTGGACACAATGAAGAAAACAACACGGAAAAGTAGAAAAGAGGGAAGGATAGTGAATGTCTCCTCAATGGCTCATCGGTACCCATATCGTGAAGGGATTCGCTTTGATAAGATCAATGATAAATCAGGGTATAGCAGTCTATTCGCTTATGGCCAATCAAAGCTTGCTAATGTTTTGCATGCTAATGAGCTTGCACGACGTTTTAAGGAAGATGGGGTGGACATAACTGCTAATTCGCTTCACCCAGGAGCAATTGTCACCAATCTTTTCCGTTGTAGCAGCATTGTTTCTGGACTGGTTAATACGGTTGGCAAACTTGTGCTTAAAAATGTTCAGCAGGGAGCTGCAACAACATGCTATGTGGCATTGCATCCACAGGTGAAGGGGGTGAGCGGCCAATATTTTTCTGACTGTAACATAGCCAAACCCAGCTCACAGGCCAAAGACCCTGAATTGGCGAAGAAGCTCTGGGAATTCAGCATGAATTTGGTTAAATGA 1878 0.4446 MWLFSRKGASGFSGSSTAEEVTQGIDGTGLTAIVTGASSGIGTETTRVLALRGVHVVMGVRNMAAGQEVKEAIVKEIPTAKVDVMELDLSSMASVRKFASEFNSSGLPLNILINNAGTTGPYMLSKDNIEMLFATNHLGHFLLTSLLLDTMKKTTQESGKEGRIVIVSSEGHRFTYRGGIRFDNINDKSGYSSPFAYGQSKLANVLHANELARRFKEDGVDITANSLHPGAIVTNIFRHSSILSGLVNTVGKYVLKNVQQGAATTCYVALHPQVKGVSGQYFSDCNIAKPGAQAKDPELAKKLWEFSTGERRMWWFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETTRVLALRGVHVVMGVRNMSAGKEVKEAIVKEIPTAKVDAMELDLSSMASVRKFASEYNSSGLPLNILINNAGIMAVPYMLSKDNIEMQFATNHLGHFLLTNLLLDTMKKTTRKSRKEGRIVNVSSMAHRYPYREGIRFDKINDKSGYSSLFAYGQSKLANVLHANELARRFKEDGVDITANSLHPGAIVTNLFRCSSIVSGLVNTVGKLVLKNVQQGAATTCYVALHPQVKGVSGQYFSDCNIAKPSSQAKDPELAKKLWEFSMNLVK* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0945 625 CDD retinol-DH_like_SDR_c_like 29 304 - -
Vvi16g0945 625 Gene3D - 22 312 - -
Vvi16g0945 625 Gene3D - 334 625 - -
Vvi16g0945 625 FunFam WW domain-containing oxidoreductase 330 625 - -
Vvi16g0945 625 Pfam short chain dehydrogenase 343 491 IPR002347 -
Vvi16g0945 625 Pfam short chain dehydrogenase 31 172 IPR002347 -
Vvi16g0945 625 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 510 529 IPR002347 -
Vvi16g0945 625 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 419 430 IPR002347 -
Vvi16g0945 625 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 475 483 IPR002347 -
Vvi16g0945 625 PRINTS Glucose/ribitol dehydrogenase family signature 419 430 IPR002347 -
Vvi16g0945 625 PRINTS Glucose/ribitol dehydrogenase family signature 469 485 IPR002347 -
Vvi16g0945 625 PRINTS Glucose/ribitol dehydrogenase family signature 533 550 IPR002347 -
Vvi16g0945 625 PRINTS Glucose/ribitol dehydrogenase family signature 343 360 IPR002347 -
Vvi16g0945 625 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 289 IPR036291 -
Vvi16g0945 625 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 341 602 IPR036291 -
Vvi16g0945 625 PANTHER RETINOL DEHYDROGENASE 321 625 - -
Vvi16g0945 625 CDD retinol-DH_like_SDR_c_like 341 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0945 Vvi-Chr16 17682454 17699255 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0945 345 495 Acyl Lipid Metabolism Gene Families AT1G62610 32.099 3.71e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0945 - - vvi:100264493 597.816