Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0942 ATGTCAGAAAGTGCTATGGCAGTTGTGAAACCTGAGTCTTATATCTGGCTCCAAACTGCTGATGGTTCTATTCAACAAGTTGAAGAAGAGGTTGCCATGTTTTGCCCCATGATATGCCGAGAAATACTTCAGACTGGCATGGGATCTTCCAAAAATTATGCCATATCACTTCCACAACGAGTCAATCCTGCTATCTTGGGCTTAATACTTGATTACTGTCGGTTTCATCAAGTACCAGGTCGCTCAAATAAGGAGCGGAAATCCTTTGATGAGAAGTTCATTCGGATGGATACAAAAAAGTTATGTGAGTTGACATCTGCTGCTGACAGCCTCCAGCTGAAGCCTTTGGTTGACCTCACCAGCCGTGCACTTGCTCGAATTATTGAGGGGAAAACTCCTGAGGAAATTCGTGAGACGTTTCATTTGCCTGATGATCTTACAGAGGAGGAGAAGTTGGAGCCCTTGAGAAACATAACTGATGATCCACGGATTCGGCTATTGAATAGATTATATGCAAGAAAAAGGAAAGAATTAAAAGAGAGAGAGAAATTGAAGAATGTTGAGGTTGAAGAGGAGCGTGTGGATGAGCGTTCGGTGGATGATCTCCTGTCATTTATTAATGGTGAAGATGGAGATTCTAAAGGGGTTAGAGCTTCTAAGAATAAAAAAAAAAATCGGAGAAGAAAGGATCAAATGAAGGACTCTTCTTCAAACAATGTAAATGGAGACCATAAAAAGGAGTTGGATGGAGTCCACACATCTTGCCATAATGCCGAGGCTGATGAAATGTTGGTGTCCACCCCTAGTAAAACTTCAAAATTGCAGGAACTTCCTGCTTCCACCTTTTCACCTAAACTTGAGTTTGACGATGGAGATATTGATGATGAGTTAGATCCTGCAATGAAGGAACAACTTGACAGGGAAGTGGAGGATTTTGCTCGGAGATTGAATTCAGATTGGCCGGAAAGAATGCAAGAAATTCTCTCTCTGGGTCAACAAAGAAGGCTTGTACCAATATCTATGAATGGGAATGGTTCTGCTCATAGGTACACAAGTTTGGACAGCAGATAA 1071 0.4174 MSESAMAVVKPESYIWLQTADGSIQQVEEEVAMFCPMICREILQTGMGSSKNYAISLPQRVNPAILGLILDYCRFHQVPGRSNKERKSFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYARKRKELKEREKLKNVEVEEERVDERSVDDLLSFINGEDGDSKGVRASKNKKKNRRRKDQMKDSSSNNVNGDHKKELDGVHTSCHNAEADEMLVSTPSKTSKLQELPASTFSPKLEFDDGDIDDELDPAMKEQLDREVEDFARRLNSDWPERMQEILSLGQQRRLVPISMNGNGSAHRYTSLDSR* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0942 356 SMART skp1_3 12 113 IPR001232 GO:0006511
Vvi16g0942 356 MobiDBLite consensus disorder prediction 267 296 - -
Vvi16g0942 356 FunFam SKP1-like protein 21 isoform X1 9 159 - -
Vvi16g0942 356 PANTHER SKP1 12 152 IPR016897 GO:0006511
Vvi16g0942 356 MobiDBLite consensus disorder prediction 230 249 - -
Vvi16g0942 356 SUPERFAMILY Skp1 dimerisation domain-like 87 155 IPR036296 GO:0006511
Vvi16g0942 356 Pfam Skp1 family, tetramerisation domain 15 77 IPR016073 GO:0006511
Vvi16g0942 356 MobiDBLite consensus disorder prediction 210 249 - -
Vvi16g0942 356 SUPERFAMILY POZ domain 13 77 IPR011333 -
Vvi16g0942 356 Coils Coil 167 187 - -
Vvi16g0942 356 Gene3D Potassium Channel Kv1.1; Chain A 8 158 IPR011333 -
Vvi16g0942 356 Pfam Skp1 family, dimerisation domain 114 151 IPR016072 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0942 Vvi-Chr16 17660370 17665931 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0942 - - vvi:100247347 632.098