Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0936 ATGATTCATTTTGTGCTTCTCATTAGTCGACAAGGAAAAGTGAGGTTGACAAAATGGTATTCACCTTATACTCAAAAGGAAAGAACTAAGGTAATTCGAGAGCTCAGTGGCGTAATTCTGACCCGAGGTCCCAAGCTTTGCAACTTCGTGGAGTGGAGGGGATATAAAGTTGTCTACAAAAGATATGCGAGCCTGTATTTCTGCATGTGCATTGACCAGGATGACAATGAATTGGAGGTCCTTGAAATAATCCACCATTATGTTGAGATACTGGACCGCTATTTTGGCAGTGTCTGTGAGCTGGATTTGATTTTTAATTTCCACAAGGCTTATTATATATTGGATGAGCTTTTGATTGCTGGTGAACTTCAAGAGTCAAGCAAGAAGACAGTTGCACGGCTGATAGCTGCACAGGATTCGTTGGTGGAGACTGCTAAAGAGGAGGCCAGTTCAATAAGCAATATAATTGCTCAAGCCACCAAATAA 486 0.4136 MIHFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEEASSISNIIAQATK* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0936 161 Gene3D - 1 157 - -
Vvi16g0936 161 Pfam Clathrin adaptor complex small chain 1 140 IPR022775 -
Vvi16g0936 161 ProSitePatterns Clathrin adaptor complexes small chain signature. 57 67 IPR000804 GO:0006886|GO:0016192|GO:0030117
Vvi16g0936 161 PIRSF AP_complex_sigma 1 152 IPR016635 GO:0015031
Vvi16g0936 161 FunFam AP complex subunit sigma 1 154 - -
Vvi16g0936 161 SUPERFAMILY SNARE-like 1 139 IPR011012 -
Vvi16g0936 161 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 144 IPR016635 GO:0015031
Vvi16g0936 161 CDD AP1_sigma 3 143 IPR044733 GO:0016192|GO:0030121|GO:0035615
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0936 Vvi-Chr16 17604373 17613858 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0936 K12394 - vvi:100257590 322.783