Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0933 ATGGCTTCCCTTCTTTTGATTGTTCTTCTCTTGGCGTTTACGTGGCCTTTCTGTGATTGTTCCACCCAAGTTATCAGGAAGGAGTTAAGAATTAATAAAGTGGTGAACCAGGAAACTACTGTACAATTGGGCCATTCAATTGAATATAACAGAGTTGACCCGTCACGAGTTATCCAACTTTCATGGCAACCAAGGGCTTTCTTATACAGAGGATTTCTATCTGATGAGGAGTGTGATCACCTTATTTCTTTGGCACTTGGCAAGAAAGAGGAGCTTGCAACAAATGGTGGTGACTCAGGGAATGTTGTCTTGAAGAGGCTGCTTAAAAGTTCAGAAGGTCCCTTGTATATAGATGATGAAGTGGCTGCAAGGATTGAGAAAAGGATTTCGGCTTGGACTTTTCTTCCTAAAGAAAACAGTGAGCCTTTGGAGGTTGTGCAGTACCAGTTTGAAAATGCCAAACAGAAATATAACTATTTTAGTAATAAATCCACATCGAAATTCGGTGAGCCTTTGATGGCAACAGTTCTGTTGCATCTCTCAAATGTCACCAGGGGCGGAGAGCTTTTCTTCCCAGAGTCAGAGTTAAAAAATTCTCAGTCAAAGAGTGGGATATTATCTGATTGTACAGAGAGTAGTTCTGGCTTGAGACCTGTTAAAGGGAATGCAATTCTATTTTTCAACGTTCATCCTAATGCTTCACCTGATAAGAGTAGCTCCTATGCTAGATGCCCTGTCCTCGAGGGAGAAATGTGGTGTGCTACCAAATTCTTTCACCTAAGAGCAATTGGAAGGGAAAATGTTTCATTCAAGTTAGATGGAGGTGAATGCACTGATGAGGATGAAAATTGTCCAAAGTGGGCTAGCATTGGAGAATGTCAAAGGAATCCTATCTACATGATTGGGTCCCCAGATTACTATGGGACATGTAGGAAGAGTTGCAATGTTTGCTGA 954 0.414 MASLLLIVLLLAFTWPFCDCSTQVIRKELRINKVVNQETTVQLGHSIEYNRVDPSRVIQLSWQPRAFLYRGFLSDEECDHLISLALGKKEELATNGGDSGNVVLKRLLKSSEGPLYIDDEVAARIEKRISAWTFLPKENSEPLEVVQYQFENAKQKYNYFSNKSTSKFGEPLMATVLLHLSNVTRGGELFFPESELKNSQSKSGILSDCTESSSGLRPVKGNAILFFNVHPNASPDKSSSYARCPVLEGEMWCATKFFHLRAIGRENVSFKLDGGECTDEDENCPKWASIGECQRNPIYMIGSPDYYGTCRKSCNVC* 318
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0933 317 SMART p4hc 64 259 IPR006620 GO:0005506|GO:0016705|GO:0031418
Vvi16g0933 317 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 44 261 IPR045054 -
Vvi16g0933 317 FunFam Probable prolyl 4-hydroxylase 12 56 259 - -
Vvi16g0933 317 SMART ShkT_1 276 317 IPR003582 -
Vvi16g0933 317 Gene3D q2cbj1_9rhob like domain 56 260 - -
Vvi16g0933 317 ProSiteProfiles ShKT domain profile. 277 317 IPR003582 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi16g0933 Vvi-Chr16 17588110 17591397 Dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0933 K00472 - vvi:100254198 644.81