Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0932 ATGTCGATCGTCTGTGGCATCCCTCTCCTTGAATGTGTTTACTGTCTAGCTTGTGCCCGCTGGGCATGGAAAAGATGTCTCCACACTGCAGGCCATGACAGCGAAACTTGGGGTCTTTCTACTGCTGAAGAATTTGAGCCTGTTCCCCACCTCTGCCGCTACATCCTAGCTGTCTATGAAGAAGATCTCCATCACCCTCTCTGGGAGCCTGCTGGAGGTTATGAAATTAATCCAGATTGGTTGATTCTGAAAAAAACTTATGAAGATACGCAAGGTTGTGCTCCTCCTTATATCCTATATCTGGATCATAAGCATGCTGATATAGTTCTCGCCATTAGGGGGCTTAATTTGGCAAGGGAGAGTGATTATGCAGTTCTGTTGGATAATAAGCTTGGGCAAAGGAAATTTGATGGTGGTTATGTCCACAATGGGCTTTTGAAGGCAGCTGGGTGGGTTTTGGATGCAGAGTGTGATGTTTTGAGGGAATTGGTGGAGAAGTATCCAAATTACACTTTGACTTTTACTGGTCATTCCCTTGGATCAGGGGTGGCTGCACTATTGACAATGGTGGTGGTGCATAATAGGGATAAATTGGCCAACATTGACCGGAAGAGGATCAGGTGCTATGCAATTGCACCTGCAAGGTGCATGTCGTTAAATTTGGCAGTGAGATATGCAGATCTCATCAATTCTGTTGTGCTCCAGGATGACTTTCTACCCCGGACAGCCACCCCCTTGGAAGACATTTTTAAGTCACTGTTCTGTTTGCCATGCTTATTATGCCTAAGATGCATGAAAGATACATGCGTCCCTGAAGAGAAGATGTTCAGAGATCCAAGGAGGCTGTATGCACCTGGTCGCCTCTATCACATTGTTGAGAGAAAGCCTTTCAGGATGGGAAGATTTCCCCCGGTTGTGAGGACAGCAGTACCTGTAGATGGGAGGTTTGAGCGTATTGTTCTTTCTTGTAATGCCACTTCTGACCATGCTATCATTTGGATAGAGAGAGAAGCCCAAAGGGCTCTGGATTTAATGCTAGAAAAAGATAAGATCATGGAGATCCCAGCAAAGCAGAAAATGGAGAGGCAGGAGACTTTAAAGAGAGAACACAGTGAGGAGTACAAGGCTGCATTGCAGAGGGCTGTTTCATTGGCTGTTCCCCATGCTTACTCGCCTTCTCAATATGGAACTTTCAGTGATCATGAGGAAGGGGAGAATTCCAGCAGATCAAGCGAGGGATCTTCTTATGGTTCATCCAAGACAAGTAAGAAGAAAGAAAGCTGGGATGAAGTAATCGAACGTCTTTTTGAGAAGGATGAATCGGGTTATATGGTGTTCAAAAAACCAAACGATGGTAACTGA 1362 0.4523 MSIVCGIPLLECVYCLACARWAWKRCLHTAGHDSETWGLSTAEEFEPVPHLCRYILAVYEEDLHHPLWEPAGGYEINPDWLILKKTYEDTQGCAPPYILYLDHKHADIVLAIRGLNLARESDYAVLLDNKLGQRKFDGGYVHNGLLKAAGWVLDAECDVLRELVEKYPNYTLTFTGHSLGSGVAALLTMVVVHNRDKLANIDRKRIRCYAIAPARCMSLNLAVRYADLINSVVLQDDFLPRTATPLEDIFKSLFCLPCLLCLRCMKDTCVPEEKMFRDPRRLYAPGRLYHIVERKPFRMGRFPPVVRTAVPVDGRFERIVLSCNATSDHAIIWIEREAQRALDLMLEKDKIMEIPAKQKMERQETLKREHSEEYKAALQRAVSLAVPHAYSPSQYGTFSDHEEGENSSRSSEGSSYGSSKTSKKKESWDEVIERLFEKDESGYMVFKKPNDGN* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0932 453 Pfam Lipase (class 3) 109 243 IPR002921 GO:0006629
Vvi16g0932 453 Pfam Lipase 3 N-terminal region 9 74 IPR005592 GO:0016042
Vvi16g0932 453 MobiDBLite consensus disorder prediction 393 428 - -
Vvi16g0932 453 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 449 - -
Vvi16g0932 453 CDD Lipase_3 44 241 - -
Vvi16g0932 453 SUPERFAMILY alpha/beta-Hydrolases 43 270 IPR029058 -
Vvi16g0932 453 Coils Coil 360 380 - -
Vvi16g0932 453 Gene3D alpha/beta hydrolase 39 252 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0932 Vvi-Chr16 17582996 17586990 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0932 1 450 Miscellaneous Gene Families AT3G49050 71.218 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0932 - - vvi:100259313 889.797