Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0929 ATGGGAACTTCGGTACAGGTGACTCCACTGTGTGGGGTTTACAATGAAAACCCACTCTCTTACCTGGTATCTATCGATGGATTCAATTTCTTGGTCGATTGTGGATGGAACGATCACTTCGACCCAAGTTTTCTTCAACCCCTTGCCAGGGTGGCGTCGACTATAGATGCTGTTTTGCTAGCTCATCCAGATACACTTCATCTTGGTGCTCTACCATATGCCATGAAGCAACTTGGACTTTCTGCTCCTGTTTATTCAACAGAGCCTGTGTATAGATTAGGCCTCTTGACTATGTATGATCAATATCTCTCACGAAAGCAAGTTTCAGACTTTGATTTGTTTACCCTGGATGATATTGATTCTGCTTTCCAAAACGTGACCAGATTAACATACTCTCAAAATTATCATCTATTTGGCAAAGGAGAAGGAATTGTTATTGCTCCTCATGTTGCTGGGCATCTCTTGGGAGGTACTGTCTGGAAGATAACAAAAGATGGGGAAGATGTCATATATGCTGTTGACTTTAACCATCGCAAAGAAAGGCTTTTGAATGGAACTGTTTTAGAATCTTTTGTTCGGCCTGCTGTTTTAATAACAGATGCCTATAATGCTTTGAACAATCAGCCTTCTAGACGCCAAAGGGACCAAGAATTCCTAGATGTTATACTGAAGACTCTAAGAGGGGATGGAAATGTATTGCTACCTGTTGATACTGCTGGCCGAGTGTTGGAACTTATGCTAATATTGGAACAGTACTGGACACAGCATCATTTGAACTATCCCATCTTCTTTCTGACTTATGTTGCATCAAGCACAATCGACTATGTGAAGAGTTTCCTTGAGTGGATGAGTGATTCAATAGCCAAGTCTTTTGAACACACACGTGACAATGCCTTTCTTTTGAAACATGTCACACTTTTGATCAGCAAGAGTGAACTTGAGAAAGTTCCTGACGGTCCTAAGATTGTTCTAGCATCCATGGCCAGTTTGGAAGCGGGGTTCTCTCATGATATATTTGTTGAGTGGGCAACTGATGCAAAAAATCTTGTGCTGTTTAGCGAAAGAGGCCAGTTTGCCACGTTAGCCCGCATGCTTCAGGCGGATCCACCTCCTAAAGCTGTTAAAGTCACCATGTCCAAGAGGGTTCCTTTGGTTGGGGAGGAGTTAGCTGCTTATGAAGAAGAGCAGGAACGGATAAAAAAGGAGGAAGCTCTAAAAGCTAGTCTTAGCAAAGAGGACGAAATGAAAGCATCTCGTGGATCTGATAACAAATTGGGTGATCCAATGGTCATTGACACTACCACTCCTCCTGCTTCATCAGACGTGGCTGTCCCGCATGTTGGTGGGCACCGTGACATATTAATTGATGGGTTTGTTCCACCTTCTACTAGTGTTGCTCCAATGTTTCCATTTTATGAGAACTCCTCTGAGTGGGATGACTTTGGTGAAGTTATCAATCCAGAGGATTATGTAATCAAGGATGAAGACATGGACCAAGCAACCATGCAGGTTGGTGACGATCTGAATGGGAAACTTGATGAAGGCGCAGCTAGTTTGATATTTGATACAACGCCTTCAAAAGTTATATCTAATGAATTGACAGTGCAAGTGAAGTGTATGTTGGTTTACATGGATTTTGAGGGCCGTTCTGATGGCCGCTCAATTAAGTCCATTCTTTCTCATGTGGCTCCACTAAAGCTTGTTTTGGTGCATGGATCAGCAGAGGCGACCGAGCATTTGAAGCAACACTGCTTGAAACATGTTTGTCCCCATGTTTATGCTCCCCAAATTGGAGAAACAATTGACGTCACCTCAGATTTATGCGCTTACAAGGTCCAACTCTCTGAGAAGCTGATGAGCAATGTGCTATTTAAGAAGCTTGGAGACTATGAAGTAGCTTGGGTTGATGCAGAAGTCGGGAAGACGGAGAGCGGCTCACTGTCTTTGCTTCCTCTCTCAACCCCACCTCCATCACACGACACAGTCTTTGTTGGCGACATAAAAATGGCAGATTTCAAGCAGTTTCTGGCAAGCAAGGGCATCCAGGTCGAGTTCTCTGGTGGGGCATTGCGGTGTGGCGAGTATGTGACCTTGCGCAAGGTTGGTGATGCAAGCCAGAAGGGTGGTGGTGCCATAATTCAGCAAATTGTGATGGAAGGGCCCCTGTGTGACGAATATTATAAGATCAGGGAGTACTTGTATTCACAATATTACTTGCTTTGA 2223 0.4386 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSFLQPLARVASTIDAVLLAHPDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSDFDLFTLDDIDSAFQNVTRLTYSQNYHLFGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKERLLNGTVLESFVRPAVLITDAYNALNNQPSRRQRDQEFLDVILKTLRGDGNVLLPVDTAGRVLELMLILEQYWTQHHLNYPIFFLTYVASSTIDYVKSFLEWMSDSIAKSFEHTRDNAFLLKHVTLLISKSELEKVPDGPKIVLASMASLEAGFSHDIFVEWATDAKNLVLFSERGQFATLARMLQADPPPKAVKVTMSKRVPLVGEELAAYEEEQERIKKEEALKASLSKEDEMKASRGSDNKLGDPMVIDTTTPPASSDVAVPHVGGHRDILIDGFVPPSTSVAPMFPFYENSSEWDDFGEVINPEDYVIKDEDMDQATMQVGDDLNGKLDEGAASLIFDTTPSKVISNELTVQVKCMLVYMDFEGRSDGRSIKSILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIGETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAEVGKTESGSLSLLPLSTPPPSHDTVFVGDIKMADFKQFLASKGIQVEFSGGALRCGEYVTLRKVGDASQKGGGAIIQQIVMEGPLCDEYYKIREYLYSQYYLL* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0929 740 MobiDBLite consensus disorder prediction 404 421 - -
Vvi16g0929 740 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 603 IPR036866 -
Vvi16g0929 740 Pfam Beta-Casp domain 242 365 IPR022712 -
Vvi16g0929 740 Pfam Metallo-beta-lactamase superfamily domain 22 198 IPR001279 -
Vvi16g0929 740 CDD CPSF2-like_MBL-fold 8 203 IPR035639 -
Vvi16g0929 740 Pfam Cleavage and polyadenylation factor 2 C-terminal 650 737 IPR025069 -
Vvi16g0929 740 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 1 739 IPR027075 GO:0005847|GO:0006378|GO:0006379
Vvi16g0929 740 FunFam Cleavage and polyadenylation specificity factor subunit 2 6 255 - -
Vvi16g0929 740 Coils Coil 392 412 - -
Vvi16g0929 740 Gene3D - 7 260 IPR036866 -
Vvi16g0929 740 SMART Beta_Casp_2 242 365 IPR022712 -
Vvi16g0929 740 MobiDBLite consensus disorder prediction 404 429 - -
Vvi16g0929 740 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 534 585 IPR011108 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0929 K14402 - vvi:100267865 1459.89