Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0928 ATGGAGCCATTGTGGAAGCTTTTATATTTGTTGGAACCTGCACCTGTTACTCTTGTATTGACAGCAGTGGCTGTGACATTTGGTTCTGCACTTCGAGCTTTAAACTATGGGAAAGAAATGGAGCGAAACCGTGACTTATCAGAAGCATCTATTACTTTAGATAGGTCCCAAGCTCTGATGATCCCGATAATGAGCTCTTGCAGTTTGCTCTTGATGTTCTACTTGTTCTCTTCTGTATCTCAACTCCTCACTGCATTCACTGCTGTTGCCTCTGCTTCATCCCTTTTCTTTTGCCTATCTCCTTACGTCATGTATTTGAAGTCGCAACTTGGGTTGCCGGACCCATTTGTGTCACGCTGCTGTTCGAAGTCTTTTACTCGCATACAAGGGCTCCTATTGCTGTTATGCTCTGGAATAGTTGCAGCTTGGCTCGTGTCTGGGCATTGGATATTGAACAACTTGTTGGGAATTTCTATATGTATTGCATTTGTGAGCCATGTCCGCCTTCAGAACATCAAAATATGTGCCATGCTACTTGCTTGTCTGTTCGTATATGACATCTTCTGGGTTTTCTTTTCTGAAAGATTTTTTGGGGCAAATGTTATGGTGTCGGTAGCCACACAACAAGCATCCAATCCTGTGCACACGGTAGCTAACAGTTTGAGTCTCCCTGGGTTGCAATTGATCACAAAGAAGCTGGAGTTGCCGGTGAAGATCGTTTTTCCTAGGAACTTGTTTGGAGGAGTTGTTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATGGCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAAAGCAGGGATTCAGTAAGTCCCTTAGATATACCTTCAGCTAAAGGGCACAAATATATATGGTATGCCCTTTCGGGATATGCAATTGGACTTGTAACTGCTTTGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAGCTAGCAGAATTATGGGAAGGGACTATGCCAGACCAGAATGATAAAGCTCATTTAACAGAAGTTTAA 1116 0.4355 MEPLWKLLYLLEPAPVTLVLTAVAVTFGSALRALNYGKEMERNRDLSEASITLDRSQALMIPIMSSCSLLLMFYLFSSVSQLLTAFTAVASASSLFFCLSPYVMYLKSQLGLPDPFVSRCCSKSFTRIQGLLLLLCSGIVAAWLVSGHWILNNLLGISICIAFVSHVRLQNIKICAMLLACLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVVPGGNSADFMMLGLGDMAIPAMLLALVLCFDHRKSRDSVSPLDIPSAKGHKYIWYALSGYAIGLVTALAAGVLTHSPQPALLYLVPATLGPIIFVSWIRKELAELWEGTMPDQNDKAHLTEV* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0928 371 PANTHER SIGNAL PEPTIDE PEPTIDASE 11 361 IPR007369 GO:0004190|GO:0016020
Vvi16g0928 371 Pfam Signal peptide peptidase 49 358 IPR007369 GO:0004190|GO:0016020
Vvi16g0928 371 SMART psh_8 49 348 IPR006639 GO:0004190|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0928 Vvi-Chr16 17535854 17540133 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0928 K09598 - vvi:100245846 722.62