Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0926 ATGTCTGAGGTTGACCTTCACCAGGAAGGTCAATGGATTGAATCTACATCTATTCTATCTTCTCTTTCCATGTTGCTCTTGGAGGATTGTGAACTCGATAACATGAGTCCATCTCTTGAGTATGTTAATTTTACATCTCTCACAGTCCTTTCTCTTTATGGGAATCATTTTAGTCATGAGATACCCAATTGGCTATCTAATCTCACCACTAATCTTTTAAAACTCGATCTACGTGACAATTCTCTAAAGGGTCATATACCCATCACCATTCTAGAGTTACGTTACTTAAATATTTTATATTTGTCAAGAAATCAATTGACAGGGCAAATACCGGAGTATTTAGGGCAACTCAAACATCTCGAAGCTCTTTCACTTAGATATAATTCCTTTGATGGTCCAATTCCTTCATCTCTAGGGAACCTATCATCCTTAAGGAGTTTATATTTGTATGGAAATAGGTTAAATGGAACTCTTCCAAGCAGTCTGTGGCTTCTTTCAAATTTGGAGGATTTAGAGATAGGAAATAACTCCTTAGTAGACACAATATCAGAAGTGCATTTTAACGAACTCTCAAAATTGAAGTACTTAGATATGTCCTCAACATCTTTTACTTTCAAAGTCAACTCCAATTGGGTCCCCTCTTTTGAACTTGAAGAATTGTTGATGAGTTCCTGCCAGATGGGCCCCAAGTTTCCTACATGGCTACAAACTCAAACATCTCTTCGGAATCTGGACATTTCCAAGTCAGGAATTGTGGACATAGCTCCAACATGGTTCTGGAAGTGGGCTTCACATATAGAATGGATCTATCTCTCTGATAACCAGATATCCGGGGATTTATCTGGAGTTTGGCTTAACAATACTATCATCTATTTGAACTCTAATTGCTTCACCGGTCTGTTACCTGCAGTGTCTCCAAATGTTACTGTATTGAACATGGCCAACAATTCTTTTTCGGGACCAATTTCCCATTTCTTGTGCCAAAAGTTGAAGGGAAGAAGTAAATTGGAGGCGCTGGACTTGTCAAATAATGATTTATCTGGAGAGCTTCCTCTGTGTTGGAAGTCTTGGCAGTCTCTGACCCATGTAAACTTGGGAAACAACAACTTTTCGGGTAAAATTCCTGACTCCATAAGCTCTTTATTTTCACTCAAAGCATTGCACCTGCAGAATAATGGCTTATCTGGAAGCATACCCTCATCCTTGCGAGGGTGCACATCTTTGGGGCTCCTGGATTTAAGTGGTAATAAACTTTTGGGAAATGTACCAAATTGGATAGGAGAATTGTCAGCTTTAAAAGTTCTCTGTTTAAGATCTAACAAATTCATTGCCGAAATTCCTTCACAGATCTGCCAACTTTCTTCTCTTATAGTATTGGATGTTTCAGATAATGAGTTGTCTGGAATTATACCCAGGTGTTTGAATAATTTCAGTTTAATGGCCGCAATAGAGACTCCAGATGACCTGTTTACTGATTTAGATAATTCCAATTATGAATTGGAGGGTCTTGTGTTGATGACAGTTGGAAGAGAACTTGAGTACAAAGGGATTCTTAAATATGTTAGAATGGTAGACCTGTCAAGTAATAATTTTTCTGGATCAATCCCTACTGAATTATCACAACTTTTTGGACTACGATTCTTAAACGTGTCTAAAAATCATTTGATGGGAAGGATACCGGAGAAAATTGGAAGAATGACATCTTTACTATCTCTTGATCTCTCCACAAACCATCTTTCAGGTGAAATTCCTCAAAGTCTGGCCGATTTAACATTTCTTAATCGCTTGAACCTATCATGCAATCAATTTCGGGGAAGAATTCCTTTAAGCACACAGCTTCAGAGCTTTGATGCATTCAGCTACATTGGCAATGCCCAACTTTGCGGAGTCCCTCTTACAAAAAATTGCACAGAAGATGATGAATCTCAAGGTATGGACACCATTGATGAAAATGAAGAAGGTTCTGAAATGCGATGGTTCTACATTAGCATGGGACTTGGGTTCATTGTAGGCTTTTGGGGAGTCTGTGGTGCTCTTTTATTGAAGAAAAGTTGGAGGCATGCTTATTTCCAGTTTCTTTATGACATTAGAGACTGGGTATACGTGGCCGTAGCGATAAGGTTGAATTGGTTCCACGACAATTTGAGGAGGCTGTTGGTAAGTGAAACACATCATTGA 2178 0.3866 MSEVDLHQEGQWIESTSILSSLSMLLLEDCELDNMSPSLEYVNFTSLTVLSLYGNHFSHEIPNWLSNLTTNLLKLDLRDNSLKGHIPITILELRYLNILYLSRNQLTGQIPEYLGQLKHLEALSLRYNSFDGPIPSSLGNLSSLRSLYLYGNRLNGTLPSSLWLLSNLEDLEIGNNSLVDTISEVHFNELSKLKYLDMSSTSFTFKVNSNWVPSFELEELLMSSCQMGPKFPTWLQTQTSLRNLDISKSGIVDIAPTWFWKWASHIEWIYLSDNQISGDLSGVWLNNTIIYLNSNCFTGLLPAVSPNVTVLNMANNSFSGPISHFLCQKLKGRSKLEALDLSNNDLSGELPLCWKSWQSLTHVNLGNNNFSGKIPDSISSLFSLKALHLQNNGLSGSIPSSLRGCTSLGLLDLSGNKLLGNVPNWIGELSALKVLCLRSNKFIAEIPSQICQLSSLIVLDVSDNELSGIIPRCLNNFSLMAAIETPDDLFTDLDNSNYELEGLVLMTVGRELEYKGILKYVRMVDLSSNNFSGSIPTELSQLFGLRFLNVSKNHLMGRIPEKIGRMTSLLSLDLSTNHLSGEIPQSLADLTFLNRLNLSCNQFRGRIPLSTQLQSFDAFSYIGNAQLCGVPLTKNCTEDDESQGMDTIDENEEGSEMRWFYISMGLGFIVGFWGVCGALLLKKSWRHAYFQFLYDIRDWVYVAVAIRLNWFHDNLRRLLVSETHH* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0926 725 PRINTS Leucine-rich repeat signature 566 579 - -
Vvi16g0926 725 PRINTS Leucine-rich repeat signature 336 349 - -
Vvi16g0926 725 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 327 422 - -
Vvi16g0926 725 Gene3D Ribonuclease Inhibitor 4 207 IPR032675 -
Vvi16g0926 725 SMART LRR_typ_2 93 117 IPR003591 -
Vvi16g0926 725 SMART LRR_typ_2 44 68 IPR003591 -
Vvi16g0926 725 SMART LRR_typ_2 141 165 IPR003591 -
Vvi16g0926 725 SMART LRR_typ_2 566 594 IPR003591 -
Vvi16g0926 725 SMART LRR_typ_2 429 452 IPR003591 -
Vvi16g0926 725 SMART LRR_typ_2 453 476 IPR003591 -
Vvi16g0926 725 SMART LRR_typ_2 381 405 IPR003591 -
Vvi16g0926 725 SUPERFAMILY L domain-like 322 633 - -
Vvi16g0926 725 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 514 636 - -
Vvi16g0926 725 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Vvi16g0926 725 Pfam Leucine rich repeat 359 418 IPR001611 GO:0005515
Vvi16g0926 725 FunFam Leucine-rich repeat receptor protein kinase EMS1 89 185 - -
Vvi16g0926 725 Gene3D Ribonuclease Inhibitor 216 645 IPR032675 -
Vvi16g0926 725 PANTHER LRR RECEPTOR-LIKE KINASE 11 121 - -
Vvi16g0926 725 Pfam Leucine Rich Repeat 455 477 IPR001611 GO:0005515
Vvi16g0926 725 Pfam Leucine Rich Repeat 335 355 IPR001611 GO:0005515
Vvi16g0926 725 FunFam LRR receptor-like serine/threonine-protein kinase GSO2 186 286 - -
Vvi16g0926 725 SUPERFAMILY L domain-like 11 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0926 Vvi-Chr16 17491816 17493993 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0926 7 694 Receptor kinase-like Gene Family AT3G05660 31.736 3.84e-83 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0926 - - vri:117933360 1310.43