Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0921 ATGCACGAGGTTGACCTTCATAGGGAAGTTCAATGGGTTGAATCTATATCAATGTTATCTTCCCTTTCCAAGTTGTTCTTGGAGGATTGTGAACTTGATAACATGAGTCCATCTCTTGAGTATGTCAATTTTACATCTCTCACAGTCCTTTCTCTTTATGGGAATCATTTCAATCATGAGTTGCCCAATTGGCTATCTAATCTCACCGCTAGTCTTTTACAACTCGATCTAAGTCGCAATTGTCTAAAGGGTCATATACCCAACACCATTATAGAGTTACGTCACTTAAATATTTTATATTTGTCAAGAAATCAACTAACAAGGCAAATACCAGAGTATTTAGGGCAACTCAAACATCTAGAAGCTCTTTCACTTAGATATAATTCCTTTGATGGTCCTATTCCTTCATCTCTAGGAAACTCATCATCCTTGAGGTATTTATTTCTGTATGGAAATAGGTTAAATGGAGCTTTTCCAAGCAGTCTGTGGCTTCTTTCAAATTTGGAGACTTTAGATATAGGAAATAACTCCTTAGCCGACACAGTATCAGAAGTGCATTTTAACGAACTCTCAAAATTGAAGTTCTTAGACATGTCCTCAACATCTCTTAATTTCAAAGTCAACTCCAATTGGGTCCCCCCTTTTCAACTTGAAGAATTGTGGTTGAGTTCTTGCCAGATGGGCCCCAAGTTTCCTACATGGCTACAAACTCAAACATCTCTTCGGAATCTGGACATTTCCAAGTCAGGAATTGTGGACATAGCTCCAACATGGTTCTGGAAGTGGGCTTCACATATTGAATGGATCTATCTCTCTGATAACCAGATATCCGGGGATTTATCTGGAGTTTGGCTTAACAATACTAGCATCTATTTGAACTCTAATTGCTTCACCGGTCTGTTACCCGCAGTGTCTCCAAATGTTACTGTATTGAACATGGCCAACAATTCGTTTTCGGGACCAATTTCCCATTTCTTGTGCCAAAAGTTGAAGGGAAAAAGTAAATTGGAGGCGCTGGACTTGTCAAATAATGATTTATCTGGAGAGCTTCCTCTGTGTTGGAAGTCTTGGCAGTCTCTGACTAATGTAAACTTGGGAAACAACAACTTTTCGGGTAAAATTCCAGACTCTGTAGGCTCTTTATTTTCACTCAAAGCATTGCACCTGCAGAATAATGGCTTATCTGGGAGTATACCCTCGTCCTTGCGAGACTGCACATCTTTGGGGCTCCTGGATTTAAGTGGTAATAAACTTTTGGGAAATATACCAAATTGGATAGGAGAATTGACAGCTTTAAAAGCTCTATGTTTAAGATCCAACAAATTCATTGGCGAAATTCCTTCACAGATCTGCCAACTTTCTTCTCTTACAATATTGGATGTTTCAGATAATGAGTTGTCCGGAATTATACCCAGGTGTTTGAATAATTTCAGTTTAATGGCCACAATAGATACTCCAGATGACCTGTTTACTGATTTAGAATATTCCAGTTATGAATTGGAGGGTCTTGTATTGGTGACGGTTGGAAGAGAACTTGAGTACAAAGGGATTCTTAGATATGTTAGAATGGTAGACCTGTCAAGTAATAATTTTTCTGGATCAATCCCTACTGAATTATCACAACTTGCTGGACTACGGTTCTTAAACTTGTCTCGAAATCATTTGATGGGAAGGATACCAGAGAAAATTGGAAGAATGACATCTTTACTATCTCTTGATCTCTCCACAAACCATCTTTCAAGTGAAATTCCTCAAAGTTTGGCCGATTTAACATTTCTTAATCGCTTGAACCTATCATGCAATCAATTTCGGGGAAGAATTCCTTTAAGCACACAGCTTCAGAGCTTTGATGCATTCAGCTACATTGGCAATGCCCAACTTTGCGGAGTCCCTCTTACAAAAAACTGCACAGAAGATGATGAATCTCAAGGTATGGACACCATTGATGAAAATGAAGAAGGTTCTGAAATGCGATGGTTGTACATTAGCATGGGACTTGGGTTCATTGTGGGCTTTTGGGGAGTCTGTGGTGCTCTTTTATTCAAGAAAAGTTGGAGGCATGCTTATTTCCAGTTTCTTTATGACATTAGAGACTGGGTATACGTGGCCGTAGCGATAAGGTTGAATTGGTTCCACGACAATTTGAGGAGGCTGTTGGTAAGTTAA 2166 0.391 MHEVDLHREVQWVESISMLSSLSKLFLEDCELDNMSPSLEYVNFTSLTVLSLYGNHFNHELPNWLSNLTASLLQLDLSRNCLKGHIPNTIIELRHLNILYLSRNQLTRQIPEYLGQLKHLEALSLRYNSFDGPIPSSLGNSSSLRYLFLYGNRLNGAFPSSLWLLSNLETLDIGNNSLADTVSEVHFNELSKLKFLDMSSTSLNFKVNSNWVPPFQLEELWLSSCQMGPKFPTWLQTQTSLRNLDISKSGIVDIAPTWFWKWASHIEWIYLSDNQISGDLSGVWLNNTSIYLNSNCFTGLLPAVSPNVTVLNMANNSFSGPISHFLCQKLKGKSKLEALDLSNNDLSGELPLCWKSWQSLTNVNLGNNNFSGKIPDSVGSLFSLKALHLQNNGLSGSIPSSLRDCTSLGLLDLSGNKLLGNIPNWIGELTALKALCLRSNKFIGEIPSQICQLSSLTILDVSDNELSGIIPRCLNNFSLMATIDTPDDLFTDLEYSSYELEGLVLVTVGRELEYKGILRYVRMVDLSSNNFSGSIPTELSQLAGLRFLNLSRNHLMGRIPEKIGRMTSLLSLDLSTNHLSSEIPQSLADLTFLNRLNLSCNQFRGRIPLSTQLQSFDAFSYIGNAQLCGVPLTKNCTEDDESQGMDTIDENEEGSEMRWLYISMGLGFIVGFWGVCGALLFKKSWRHAYFQFLYDIRDWVYVAVAIRLNWFHDNLRRLLVS* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0921 721 PANTHER LRR RECEPTOR-LIKE KINASE 32 137 - -
Vvi16g0921 721 SMART LRR_typ_2 381 405 IPR003591 -
Vvi16g0921 721 SMART LRR_typ_2 542 565 IPR003591 -
Vvi16g0921 721 SMART LRR_typ_2 165 189 IPR003591 -
Vvi16g0921 721 SMART LRR_typ_2 19 42 IPR003591 -
Vvi16g0921 721 SMART LRR_typ_2 93 117 IPR003591 -
Vvi16g0921 721 SMART LRR_typ_2 453 476 IPR003591 -
Vvi16g0921 721 SMART LRR_typ_2 44 68 IPR003591 -
Vvi16g0921 721 SMART LRR_typ_2 566 590 IPR003591 -
Vvi16g0921 721 SUPERFAMILY L domain-like 16 299 - -
Vvi16g0921 721 PRINTS Leucine-rich repeat signature 453 466 - -
Vvi16g0921 721 PRINTS Leucine-rich repeat signature 336 349 - -
Vvi16g0921 721 Gene3D Ribonuclease Inhibitor 70 184 IPR032675 -
Vvi16g0921 721 Gene3D Ribonuclease Inhibitor 10 69 IPR032675 -
Vvi16g0921 721 FunFam Leucine-rich repeat receptor protein kinase EMS1 92 185 - -
Vvi16g0921 721 Pfam Leucine rich repeat 94 154 IPR001611 GO:0005515
Vvi16g0921 721 Pfam Leucine rich repeat 359 418 IPR001611 GO:0005515
Vvi16g0921 721 Gene3D Ribonuclease Inhibitor 185 639 IPR032675 -
Vvi16g0921 721 FunFam LRR receptor-like serine/threonine-protein kinase GSO2 186 283 - -
Vvi16g0921 721 Pfam Leucine Rich Repeat 335 355 IPR001611 GO:0005515
Vvi16g0921 721 Pfam Leucine Rich Repeat 455 477 IPR001611 GO:0005515
Vvi16g0921 721 SUPERFAMILY L domain-like 291 633 - -
Vvi16g0921 721 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 329 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0921 Vvi-Chr16 17423020 17425185 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0921 37 643 Receptor kinase-like Gene Family AT4G04220 33.841 3.23e-83 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0921 - - vvi:100265180 1452.57