Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0915 ATGGCGACTCAGTACGGCGTACAGCTCGCCGTTCATCTCATCTCCTCTCACTTCGGGAATCTCGTTGCGAAAGTGTGTGATTGTCTTCTTCGCAAAGGAACCCTAACGCTCGCGAGCGTAATCCGTTTTACCGAACTCCCTCCTCAACAAGTGAAGAGCTGTATACTTGTGTTGATCCAACATAATTGTGTTCAAGCTTTTGCTATACAGCAAGAAGTTGGTTTTGGAGAAGCACCAAGGGTTGTAACTCAGTATATGGCTTTGTTTCACAATATCCTTCACCGAATGAGATTTGCGAAATTCTTGGCAATTGTGTCTGAGGAGCTTGATAAAGAATGTGAGGAAATTCTTGAAGGTTTGCTTCAACATGGCAGACTTACACTGGAACAAATATTGGATAGAGCCAAGTCAAATCAAAGTGAAGGAGAGCCTGTAGTTCAGGATGCTTTACGAGAAAGCTTTCTTAAACTTGTAAGAGCCCATTTTGTGGAGCGCTGTCCTGCCTCTGAACCATTTCTTGCCCCACCAAGTGAAGAAGAGACTCCTGCAAGAAAGCGAGGTGCTAAATCTGCTAAGCTAGTTGAAGAACCACAGACTATAGAGCAACGTGCTATAGCAGCAGCAGCACCCATGGATGCAAAAAGATTTTCAGTTATAATAAATACTGGCACTGATGTGGATGATTCTCCTAATGTGACTGCTGGGGAGAAGCGCAAACAAGATGCTTTAGAATTGGATAAAGAAACTGGGGCTTCTTGTGAGAAAGATGTTCTTTGGCGTGCCAATTTCGAAGAATTTGTACGTTGTCTTAGGCATAAGGCTTGTATTGCGAATGTGAAAACACGGCTGGATGATGGAGCTGCAATTGTTTTAAGTGCAATGCTGGAGGCAACTCGAAGTGAGGAGAAGAAGGTTAAAACAGAAAATTCAGTTCCCTTGTCGATGGACACCATTTTTGAAGGAGTGATGAAGAGTGAAGCAGGTCGTAGCATGACCCTAGAACGTGTCAGAGGTTCCCTTATTCAGTTAGGTTGTGCCCCCTGCGTAAGAGGGGCTGCTGAGTCATATAGTGTTGGTATCATTTTGCCTTCCTCCATCTCGTTCATCCTATTTATTTCTGCTTAA 1125 0.4391 MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQHNCVQAFAIQQEVGFGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGLLQHGRLTLEQILDRAKSNQSEGEPVVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEETPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDDSPNVTAGEKRKQDALELDKETGASCEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLEATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGAAESYSVGIILPSSISFILFISA* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0915 374 Gene3D - 90 173 IPR036388 -
Vvi16g0915 374 Pfam RNA polymerase III subunit RPC82 152 333 IPR008806 GO:0003677|GO:0006351
Vvi16g0915 374 Gene3D - 262 344 IPR036388 -
Vvi16g0915 374 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 1 351 IPR039748 GO:0003697|GO:0005666
Vvi16g0915 374 FunFam DNA-directed RNA polymerase III subunit RPC3 2 87 - -
Vvi16g0915 374 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 8 67 IPR013197 -
Vvi16g0915 374 Gene3D - 2 85 IPR036388 -
Vvi16g0915 374 MobiDBLite consensus disorder prediction 173 194 - -
Vvi16g0915 374 FunFam DNA-directed RNA polymerase III subunit rpc3 89 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0915 Vvi-Chr16 17263969 17271370 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0915 K03023 - vvi:100267008 696.812