Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0908 ATGGGAAGTTTGAGATATCTTGACCTCTCCTATGCTGGATTTGGTGGACTAGTCCCTCATCAGCTTGGAAATCTCTCGACTCTTCGTCACCTGGATCTGGGACGTAACTATGGGCTGTACGTTGAGAATCTTGGTTGGATTTCTCATCTTGTTTTTTTGAAGTACCTAGGCATGAATCGGGTCGACCTTCACAAGGAAGTCCATTGGCTTGAATCCGTGTCTATGTTCCCTTCTCTTTCAGAGCTGCACTTGTCCGATTGTGAACTTGATAGCAATATGACTTCATCTCTCGGGTATGACAATTTCACATCTCTCACATTTCTTGATCTTTCTGACAACAATTTCAATCAAGAAATACCAAATTGGTTGTTTAATCTCAGTTGTCTTGTGTCTCTAAGGCTATATCTCAATCAATTCAAGGGGCAAATTTCAGAGTCTTTAGGACAACTCAAATATCTAGAATATCTCGATGTTTCTTGGAATTCCTTTCATGGCCCTATTCCTGCATCCATAGGAAACTTATCATCCTTGATGTATTTGAGTCTTTATCATAATCCGTTGATTAATGGCACTCTTCCAATGAGTCTGGGGCTTCTATCCAATTTGGAGATATTAAATGTAGGATGGACTTCCTTAACAGGGACCATATCAGAAGCACATTTTACAGCACTCTCAAAATTGAAGCGCTTATGGATATCTGGGACATCTTTATCTTTCCATGTGAACTCCAGTTGGACTCCTCCATTCCAACTAGAGTTTCTGGGTGCGGATTCCTGTAAAATGGGTCCAAAATTTCCTGCGTGGCTACAGACACAAAAGTCTCTTGTCTATCTAGGCTTTTCCAGGTCTGGAATTGTGGACACAGCTCCAAACTGGTTATGGAAGTTCGCTTCATACATCCCTTGGATCAATCTCTCTAACAACCAGATATCTGGGGACTTATCCCAAGTTGTACTAAATAATACTGTCATTGATTTGAGTTCTAATTGCTTCTCAGGTCGGTTGCCACGTCTGTCTCCGAATGTTCGTATTTTGAATATTGCTAACAATTCATTCTCGGGACAGATTTCCCCTTTCATGTGCCAAAAGATGAATGGAACAAGTCAATTGGAGGCCCTTGACATATCAATTAATGCTTTATCAGGGGAACTTTCTGATTGTTGGATGCATTGGCAGTCTCTTACTCATGTAAGCCTGGGAAGCAACAATCTATCTGGTAAAATTCCTAATTCCATGGGTTCTTTGGTCGGACTTAAAGCATTGAGCTTGCACGACAATTCCTTCTATGGAGACATACCCTCATCACTAGAGAACTGCAAGGTTTTGGGGCTGATAAATCTAAGTAACAATAAATTTTCGGGGATTATACCCTGGTGGATTTTTGAGAGGACAACTCTAATTATTATCCACTTAAGATCCAATAAATTCATGGGCAAAATTCCTCCACAAATATGCCAACTTTCTTCTCTTATAGTGTTGGATCTTGCTGATAATAGTCTGTCAGGATCAATACCCAAGTGCTTGAATAATATCAGTGCTATGACTGGAGGACCTATCCATGGTATTGTGTATGGTGCTTTGGAAGCAGGTTATGATTTTGAACTTTACATGGAAAGTCTTGTTTTAGATATAAAGGGGAGGGAAGCAGAGTACGAAGAGATTCTTCAATATGTGAGGATGATTGACCTTTCAAGTAACAATTTATCTGGATCAATCCCAATTGAAATCTCAAGTCTTTTTAGACTGCAATTTCTAAACTTATCTCGAAATCATTTAATGGGGAGGATACCAGAGAAAATTGGGGTGATGGCATCATTAGAATCTCTAGATCTCTCGAGAAATCATCTTTCAGGTGAAATTCCTCAGAGCATGAGCAATTTAACATTTCTTGATGACCTGGACCTGTCATTCAACAACTTTTCTGGGAGAATTCCTTCAAGCACCCAGCTTCAAAGCTTCGATCCACTTTCTTTCTTTGGCAATCCTGAACTGTGTGGAGCCCCTCTTACGAAAAACTGCACAAAAGATGAAGAGACTCTAGGTCCCACTGCTGTAGAAGAAAACAGAGAATTTCCTGAAATCCCATGGTTTTACATCGGCATGGGATCAGGATTCATTGTGGGGTTTTGGGGAGTTTGTGGAGCTCTCTTTTTCAAGAGAGCATGGAGGCATGCTTATTTCCAGTTTCTTTATGAGATGAGAGACCGGGCCTATGTGGGTATAGCAATAAAATTGAAGTGGTTCCACCAAAAGCTGAGAAGATACCATGCTGGATGA 2277 0.4049 MGSLRYLDLSYAGFGGLVPHQLGNLSTLRHLDLGRNYGLYVENLGWISHLVFLKYLGMNRVDLHKEVHWLESVSMFPSLSELHLSDCELDSNMTSSLGYDNFTSLTFLDLSDNNFNQEIPNWLFNLSCLVSLRLYLNQFKGQISESLGQLKYLEYLDVSWNSFHGPIPASIGNLSSLMYLSLYHNPLINGTLPMSLGLLSNLEILNVGWTSLTGTISEAHFTALSKLKRLWISGTSLSFHVNSSWTPPFQLEFLGADSCKMGPKFPAWLQTQKSLVYLGFSRSGIVDTAPNWLWKFASYIPWINLSNNQISGDLSQVVLNNTVIDLSSNCFSGRLPRLSPNVRILNIANNSFSGQISPFMCQKMNGTSQLEALDISINALSGELSDCWMHWQSLTHVSLGSNNLSGKIPNSMGSLVGLKALSLHDNSFYGDIPSSLENCKVLGLINLSNNKFSGIIPWWIFERTTLIIIHLRSNKFMGKIPPQICQLSSLIVLDLADNSLSGSIPKCLNNISAMTGGPIHGIVYGALEAGYDFELYMESLVLDIKGREAEYEEILQYVRMIDLSSNNLSGSIPIEISSLFRLQFLNLSRNHLMGRIPEKIGVMASLESLDLSRNHLSGEIPQSMSNLTFLDDLDLSFNNFSGRIPSSTQLQSFDPLSFFGNPELCGAPLTKNCTKDEETLGPTAVEENREFPEIPWFYIGMGSGFIVGFWGVCGALFFKRAWRHAYFQFLYEMRDRAYVGIAIKLKWFHQKLRRYHAG* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0908 758 SMART LRR_typ_2 487 510 IPR003591 -
Vvi16g0908 758 SMART LRR_typ_2 102 126 IPR003591 -
Vvi16g0908 758 SMART LRR_typ_2 415 439 IPR003591 -
Vvi16g0908 758 SMART LRR_typ_2 603 627 IPR003591 -
Vvi16g0908 758 SMART LRR_typ_2 579 601 IPR003591 -
Vvi16g0908 758 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 551 673 - -
Vvi16g0908 758 SUPERFAMILY L domain-like 320 512 - -
Vvi16g0908 758 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 320 516 - -
Vvi16g0908 758 SUPERFAMILY L domain-like 557 669 - -
Vvi16g0908 758 Gene3D Ribonuclease Inhibitor 1 219 IPR032675 -
Vvi16g0908 758 PANTHER LRR RECEPTOR-LIKE KINASE 4 165 - -
Vvi16g0908 758 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 47 319 - -
Vvi16g0908 758 Pfam Leucine Rich Repeat 153 174 IPR001611 GO:0005515
Vvi16g0908 758 Pfam Leucine Rich Repeat 605 627 IPR001611 GO:0005515
Vvi16g0908 758 SUPERFAMILY RNI-like 3 331 - -
Vvi16g0908 758 Gene3D Ribonuclease Inhibitor 220 676 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0908 Vvi-Chr16 17187222 17189605 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0908 4 673 Receptor kinase-like Gene Family AT4G13920 33.718 8.13e-79 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0908 - - vvi:100853300 1494.18