Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0899 ATGCGTGAAATCTTGCACGTTCAGGGTGGGCAATGTGGGAACCAGATCGGAGCCAAGTTCTGGGAGATGGTCTGCGCTGAGCACGGCATCGACTCCACCGGGCGCTACCAAGGCGACACGGAGCTGCAACTGGAGCGAGTCAATGTGTACTACAACGAGGCGAGTTGTGGGAGGTTCGTGCCCAGGGCAGTGCTCATGGATGTGGAGCCGGGCACCATGGACAGTGATCTGAGTGTTTTTTAG 243 0.5761 MREILHVQGGQCGNQIGAKFWEMVCAEHGIDSTGRYQGDTELQLERVNVYYNEASCGRFVPRAVLMDVEPGTMDSDLSVF* 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0899 80 FunFam Tubulin, beta 6 class V 1 78 - -
Vvi16g0899 80 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Vvi16g0899 80 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874|GO:0007017
Vvi16g0899 80 PANTHER TUBULIN 3 75 IPR000217 GO:0005874|GO:0007017
Vvi16g0899 80 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Vvi16g0899 80 Gene3D Tubulin/FtsZ, GTPase domain 1 78 IPR036525 -
Vvi16g0899 80 Pfam Tubulin/FtsZ family, GTPase domain 3 75 IPR003008 GO:0005525
Vvi16g0899 80 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 75 IPR036525 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0899 Vvi-Chr16 17114297 17114539 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0899 K07375 - vvi:100854302 170.244